Tdou031448.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010003690.1:31840-33619[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9e-08 5.5e-05 25.1 0.0 1 36 18 53 18 58 0.87
Sequence Information
- Coding Sequence
- ATgccaagaaaacaaaaaaaactgttgggCACACGAGCGTACAGGAATTACACTCCAAATACATTGCAAGAATGCCTTGTAAAGGTCAGGTCTGGACAACTTACTCAACGAGTTGCTGCAGAAAGATATAACATCTCAAGATCTACAATCAAGAGTAAACTGAAAGGTCTGCACGACAAACCAGTAGGTCGCTCTCGTGTGTTTTCACCTGAAGAAGAATTAGCCTTTGTGCagcatttgataaaattatctgACTACGGATTTCCAGTTGTTGAATCAGATTTTCGAATGATTGTAAAAAACTATCTTGATAAAAAAGGGGCTAAGGTTAGCGTGTTCTCAGGAAATTACCCTGGCTATGAATGGACAAAAGGGTTTTTGAAAAGACATCCTGATCTTTCAGTCAGAACCAGCGCTAATATTAAGAAAGTGCGTGCTAATGTTGGTGAAGCGGAACTCAACGATTACATGGACAACTTGAGTGTCGTTTTAAAGGATATTCCTCCATCTTGCATTTGGAACTATGATGAAACTAACCTGAGTGATGATCCAGGAAATAAAAAAGTCCTGTGCAAGCGAGGCagtaaatatgttgaaaatatttgtaactttAGTAAGAGCTCTACTTCTTTAATGTTCTGTGGGAATGCCGAAGGCAGATGTCTTGCGCCATATGTTGTCTATAAGGCTGATCATTTATGGACGACTTGGACAGAAAATGGTCCACAAAATGCTCGTTATAACCGCTCTAAAAACGTCACAGAAAGCCGTGCCTCTTCGTCTAAATCTCACCCTCCGTTGAACAGAAAAAGGCTCCCATCTGATTCCTCCACTGAAGTGCTCAGTGAAAATGATCTTGATATAGAGTCTGACCAAGAAAGTGAAACGTTTTCTGACTTAGAAGAAATTTCGGATGCTGCACCTGTCATATTACCAAAATTAAAACCTGAGGATTATGCTGTCGAGGATTTTGTTCTCATTTTATTCAATGGTGGAAAGTATCCTGGAAAGATTGTCAGCATCTCAGAGGAAGGCCCTACAGTTGATTGCATGGAAAGAGGACTTAAGTTTTGGAGATGGCCTGAGAGAAAGGACTCCATGGAATATGAATGGGAAGATattcattgcaaaattgatCCTCCAAAAATGGTTTCGAAGCGAAATCAGTTTGCAGTTCCAGCTCTTGATAGTTTCGTTTAG
- Protein Sequence
- MPRKQKKLLGTRAYRNYTPNTLQECLVKVRSGQLTQRVAAERYNISRSTIKSKLKGLHDKPVGRSRVFSPEEELAFVQHLIKLSDYGFPVVESDFRMIVKNYLDKKGAKVSVFSGNYPGYEWTKGFLKRHPDLSVRTSANIKKVRANVGEAELNDYMDNLSVVLKDIPPSCIWNYDETNLSDDPGNKKVLCKRGSKYVENICNFSKSSTSLMFCGNAEGRCLAPYVVYKADHLWTTWTENGPQNARYNRSKNVTESRASSSKSHPPLNRKRLPSDSSTEVLSENDLDIESDQESETFSDLEEISDAAPVILPKLKPEDYAVEDFVLILFNGGKYPGKIVSISEEGPTVDCMERGLKFWRWPERKDSMEYEWEDIHCKIDPPKMVSKRNQFAVPALDSFV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01447485;
- 90% Identity
- iTF_01446508; iTF_01446509; iTF_01446510; iTF_01448464; iTF_01444692; iTF_01450488; iTF_01450489; iTF_01444698; iTF_01450490; iTF_01444699; iTF_01447485;
- 80% Identity
- -