Tshe048567.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010007572.1:973-8262[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.5e-14 4.9e-11 44.6 0.1 3 45 72 114 70 114 0.92
Sequence Information
- Coding Sequence
- ATGTTTCTATATTTACAGCAGAGTTTGAAAGTGGAAACTTCTTTAGAAGAAGCGCGATCTCCATACACAGACATTTCCGGAGTGGACGAAGAAACAAATGACAAGacaaacaaaataatgatgtCCCAGCCTTTTCCCAGTGTTTCGTCAGGAATCGCCACGTACGTGCCGACACAGAAACCTGAATGGAAGCGCTATAAGCAGTACACACGCAACGACATAATGTCTGCCATCGAAGCTGTCCGCACAGGGATGAGCGCTCTGCAAGCCGCCCGAAAGTACGGCGTCCCGTCCAGAACCCTCTACGACAAGGTAAAAAAGATGGGCATCACGACGAGTCGCCCGTTCAACAAACGAGTTTCGAGCGCGGGTACAGGCGGGGGTGGATATTTCCCGTACGGGGGCAGTGGTGGGGGAGGCAGTAATTCTATGGGTAGCATGTTTGGTGGGGAAAGTGACGAAATGTCGGGCAACCCCTCGACGGGGCTGATGGAACCTCTGTTCCTCCAACACGCTCTAGACGGTATGAAGCGCGAGATCGGTGAACGGGAAGCGCTGGCCGCGTTGAAACGCGAGATGGGGGGCGACAGAGAAGCGATGGCCACGGTGGCGGCCGCCCACAGCGGGGCGTCTTCGAGCCCGGGCGAGAACGGTAGGTCGCCTAGCCCGGGCCTAAAGTACCATAACAGTCTCACCCCGAGTCCCGACGAGGATCGAGATGACGACCAAGTGGAGGACTTGTCCGTGGCCCGCAAACCAGAGCCCATACGAGTTATTATGCCGCCCATGAACCAGCAGCCCAAGAAGGACGAGGAAATGTTGTCTCATTCGGAGGAGTCTCACCACAACTCGCTAGAGATCCAGGACAGACTCGACTGA
- Protein Sequence
- MFLYLQQSLKVETSLEEARSPYTDISGVDEETNDKTNKIMMSQPFPSVSSGIATYVPTQKPEWKRYKQYTRNDIMSAIEAVRTGMSALQAARKYGVPSRTLYDKVKKMGITTSRPFNKRVSSAGTGGGGYFPYGGSGGGGSNSMGSMFGGESDEMSGNPSTGLMEPLFLQHALDGMKREIGEREALAALKREMGGDREAMATVAAAHSGASSSPGENGRSPSPGLKYHNSLTPSPDEDRDDDQVEDLSVARKPEPIRVIMPPMNQQPKKDEEMLSHSEESHHNSLEIQDRLD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01444629; iTF_01448376;
- 90% Identity
- iTF_01444629; iTF_01448376;
- 80% Identity
- -