Tbar025286.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010002055.1:112953-120760[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-14 4.1e-11 44.6 0.1 3 45 72 114 70 114 0.92
Sequence Information
- Coding Sequence
- ATGTTTCTATATTTACAGCAGAGTTTGAAAGTGGAAACTTCTTTAGAAGAAGCGCGATCTCCATACACAGACATTTCCGGAGTGGACGAAGAAACTAATGACAAGacaaacaaaataatgatgtCCCAGCCTTTTCCCAGCGTTTCATCAGGAATCGCCACGTACGTGCCGACACAGAAACCTGAATGGAAGCGCTACAAGCAGTACACACGTAATGACATCATGTCTGCCATCGAAGCTGTCCGCACAGGGATGAGCGCTTTACAAGCGGCTCGAAAGTACGGTGTTCCGTCCAGGACGCTCTATGACAAGGTAAAAAAGATGGGTATCACGACGAGTCGTCCATTCAACAAACGAGTTTCGAGCGCGGGTACAGGCGGGGGTGGATATTTTCCATACGGGGGCAGTGGTGGGGGAGGTAGTAATTCTATGGGTAGCATGTTTGGTGGGGAAAGTGACGAAATGTCGGGCAATCCCTCGACGGGGCTGATGGAACCTCTGTTCCTCCAACACGCTCTAGACGGTATGAAGCGCGAGATCGGTGAACGGGAAGCGCTGGCCGCGTTGAAACGTGAGATGGGGGGTGACAGAGAAGCGATGGCTACGGTGGCAGCCGCTCACAGCGGGGCATCTTCGAGCCCCGGGGAAAACGGTAGGTCGCCTAGTCCGGGCCTAAAGTACCATAACAGTCTCACGCCGAGTCCCGACGAAGATCGAGACGACGACCAAGTGGAGGACTTGTCTGTGGCTCGCAAACCGGAACCCATACGAGTTATTATGCCGCCCATGAACCAGCAGCCCAAAAAGGACGAGGAGGAGTCTCACCACAACTCGCTGGAGATCCAGGACAGACTCGACTGA
- Protein Sequence
- MFLYLQQSLKVETSLEEARSPYTDISGVDEETNDKTNKIMMSQPFPSVSSGIATYVPTQKPEWKRYKQYTRNDIMSAIEAVRTGMSALQAARKYGVPSRTLYDKVKKMGITTSRPFNKRVSSAGTGGGGYFPYGGSGGGGSNSMGSMFGGESDEMSGNPSTGLMEPLFLQHALDGMKREIGEREALAALKREMGGDREAMATVAAAHSGASSSPGENGRSPSPGLKYHNSLTPSPDEDRDDDQVEDLSVARKPEPIRVIMPPMNQQPKKDEEESHHNSLEIQDRLD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450393;
- 90% Identity
- iTF_01450393;
- 80% Identity
- -