Tpod061077.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- stc
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000014.1:37859686-37883803[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.6 5.6e+04 -3.9 1.6 15 19 394 398 393 398 0.81 2 15 0.086 1.9e+03 0.8 0.3 4 10 427 433 426 435 0.94 3 15 2.8e-07 0.006 18.4 13.5 4 18 444 458 442 459 0.94 4 15 4.5e-06 0.098 14.5 11.8 1 18 495 512 495 513 0.96 5 15 1.4 2.9e+04 -3.0 0.8 8 13 518 523 517 524 0.76 6 15 3e-08 0.00064 21.5 14.9 1 18 553 570 553 571 0.97 7 15 0.00013 2.8 9.9 18.2 4 19 620 635 613 635 0.87 8 15 1.7 3.7e+04 -3.3 2.0 5 10 664 669 664 669 0.93 9 15 0.00067 14 7.6 8.1 1 11 675 685 675 686 0.97 10 15 2.7 5.9e+04 -4.0 0.7 4 10 690 696 690 696 0.82 11 15 1.7e-08 0.00037 22.3 16.1 1 19 702 720 702 720 0.98 12 15 1.5 3.2e+04 -3.1 0.7 6 10 749 753 748 754 0.79 13 15 3 6.5e+04 -5.4 3.7 10 12 767 769 764 777 0.50 14 15 2.3e-07 0.005 18.6 11.7 1 16 813 828 813 839 0.87 15 15 1.1e-06 0.024 16.4 13.2 1 19 845 864 845 864 0.95
Sequence Information
- Coding Sequence
- ATGGCAAACTGGAATAGGCCAAATTCATATGATAGTGGAAGAATCCCAAACTACAACTTTCAATCAAGCGAATATTCCAGACGAAATCCACATCAGTATGGAGGGGTGTCTACAAATCTACCTTATTACTCTGCTCCAAACGAAGTGGGCGTGTCTACCCCCGTACAGAATACTCCTTTGTATGAAACTTCGGGAGCACCTGTTTTTAACACGCCTATAGGTTATATAGATGCACATCAGTCGTTTCCATATTTTAACGATACAGCTGATGTAAGTGTTAATCTTCCTCAAAGGGAAGCTAATTTTGCTCTCGCAGCTACATCATCTTTGACGGCAACAGCTGGAGAGTTTATACCGAGATCGACATCTGCGCTGCACTCAAGTAGTCGAAATGGTACGAAAAATTCTGTTTTACATGGTGGCCAAGATCAGCAGCAAACAAGACATTCTGACCAAGACTGGAGAAACAATCGGGTGTACAAAAATTCATTTACAGGCTATAATCGAGGCCAGGGTAACTTCGCAAGGGATGATCGAAACTCATCACAACCTAGGAGAACTAATATGGAAGATGCAAAAAGTCAAGATCGTAGCAGATTATTGGCTGAAGCTGCAGCATTTCTTATACCTAAACCCAATCAGGTTATGCCTGGAGCTAGTGTTTCTAATGAAAATGCCGGGTCTGTTGATACCAAGTCTCAAAATGATGCTGGAGCTACAAATCCTATGGCGAGAAGGAATTTTGACTCCCAACAAAGATcaggagaaaataataaaagaatctATACAAACCctaaatatcaaaacaatacAACTTATGGTAACTATCCTAAATCTGAAAACTTCTATCAGAATCCTAGAAGAAACACTAATAGTTCTGGCTACACGAAGCAACCACAGTATTACTCCCAGCAAGGAAACGATCCAAGGGATAGAATGCCAGTAACGCTAGAAACATTTGGGGCATCTCAAAGCTATGGTAGAAATCATCATGACGAGGCAAGTCAGAGGGAGCGCCTTGTTGAGCAGTTGACTAAAGGCACACTGGAGTGCTTGGTATGCTGTGATCGTGTTCGCCAACAAGATCCTGTGTGGAGCTGCGGGAATTGCTACCATGTGTTGCACCTTAAGTGCATCAAGAAGTGGGCCAAGTCTTCCAAAGTTGAAACTGGATGGCGCTGCCCTGCCTGCCAGAATGTCACAGAGAAGGTCCCACAGCTGTATCGCTGTTTCTGCAGCAAGGCGATTGAGCCCCAGTGGAATAGACAAGATGTCCCACACACTTGTGGCGAGATGTGTGGCAAGACTCGTGACAAACCGGATTGTGTGCATCGTTGCACTCTTCTCTGCCATCCGGGACCATGCCCCCCTTGTGTTGCTCAAGTAAACAGACAATGCGGCTGTGGTGCAACATCTAAAGTGGTGAAGTGTGGTGGAGACAAACCACTACTTTGTGACGCTCTGTGTGGCAAGGAGCTAAACTGTAGTGTCCACAAGTGCACCAGGAAATGCCACATAGGAGAGTGCGGCAATTGTGAAGAAATTGTCATCCAAGCATGCCACTGTGGCAAAGAGTCTCGGAAGATTGCCTGCGACCTCACCTCAGTCGGGGTGACTAACTTCTCCTGTGGAGGAATTTGTGAGAAGCATCTGACATGTGGGAACCACCAGTGCACTGTAGTGTGTCACACTGGCCCCTGCGGAGAATGCGAGCTCTCCCCTGATAAGGTCACACACTGTCCTTGTGGTAAAACCGAGCTTACAGCAGACCAGGCCAGAAACAGCTGTTTGGATACCATTCCCAACTGTCCGCTCATCTGTGGCAAGAAGCTAGCTTGCGGTCAACCCAACAACCCCCACCATTGCAAAGAGGAGTGTCACAACGGCAAATGCCCTCCATGTCCATTAAGCACGCTTGTGAAGTGTCGCTGCGGCAATATGGACAGAGAAATCCCATGTATTGAGCTCACCACACGAGCTGATGATGCCAGGTGTGAGAAAAAATGCACCAAGaAACGTGCATGTGGCAAACATCGTTGTAACCAGCTGTGCTGCATTGACGTTGATCATGTATGCCCCATGGTTTGCAACCACATGTTGACCTGCGGGCAGCACCGCTGTGATGAGCCTTGCCACCGCGGACATTGCCGCCCCTGTTGGAGAACAAGTTTTGACGAGCTGTACTGCGAGTGCGGAGCGAGCGTGTTATACCCTCCAGTTCCCTGTGGCACTAGGCGTCCATCGTGCTCCAAGCCCTGCTCCAGACCCCACCCTTGTGAGCACCCACCGATCCACAACTGCCACAGCGAGCCGACTTGTCCACTGTGTACAGTGCTCACCCAGAAGTACTGCTATGGCAAGCATGAGCTTCGCAAGACCATTCCATGCCACCAGGCGGATTTCTCATGCGGTCTCCCGTGCAACAAGGACTTGTCTTGTGGCCGCCACCGCTGCATCTTGCCATGTCACAAGGGCCCCTGTCTGAAAGAAGGCCAGGCGTGTACACAGCCTTGCACCACCACAAGGAATCTCTGTGGACATAACTGTGCCAGTCCTTGCCACGATGGACCATGCCTCGACTCCCCTTGCAAGGAAATGGTAAAGGTGACATGCGAGTGTGGCCATAGATTTACTACTCGAGCCTGCTTTGACAACGTGAAGGAGTACCAGCGTATGGCAACATCACTGTTGGCTTCCAAGATGGCGGACATGCAGTTAGGACATTCTGTTGACATTGGTGACCTGCTTAGTAATCCAACCACTCGCAAAATGAGCCTTAAAACGTAA
- Protein Sequence
- MANWNRPNSYDSGRIPNYNFQSSEYSRRNPHQYGGVSTNLPYYSAPNEVGVSTPVQNTPLYETSGAPVFNTPIGYIDAHQSFPYFNDTADVSVNLPQREANFALAATSSLTATAGEFIPRSTSALHSSSRNGTKNSVLHGGQDQQQTRHSDQDWRNNRVYKNSFTGYNRGQGNFARDDRNSSQPRRTNMEDAKSQDRSRLLAEAAAFLIPKPNQVMPGASVSNENAGSVDTKSQNDAGATNPMARRNFDSQQRSGENNKRIYTNPKYQNNTTYGNYPKSENFYQNPRRNTNSSGYTKQPQYYSQQGNDPRDRMPVTLETFGASQSYGRNHHDEASQRERLVEQLTKGTLECLVCCDRVRQQDPVWSCGNCYHVLHLKCIKKWAKSSKVETGWRCPACQNVTEKVPQLYRCFCSKAIEPQWNRQDVPHTCGEMCGKTRDKPDCVHRCTLLCHPGPCPPCVAQVNRQCGCGATSKVVKCGGDKPLLCDALCGKELNCSVHKCTRKCHIGECGNCEEIVIQACHCGKESRKIACDLTSVGVTNFSCGGICEKHLTCGNHQCTVVCHTGPCGECELSPDKVTHCPCGKTELTADQARNSCLDTIPNCPLICGKKLACGQPNNPHHCKEECHNGKCPPCPLSTLVKCRCGNMDREIPCIELTTRADDARCEKKCTKKRACGKHRCNQLCCIDVDHVCPMVCNHMLTCGQHRCDEPCHRGHCRPCWRTSFDELYCECGASVLYPPVPCGTRRPSCSKPCSRPHPCEHPPIHNCHSEPTCPLCTVLTQKYCYGKHELRKTIPCHQADFSCGLPCNKDLSCGRHRCILPCHKGPCLKEGQACTQPCTTTRNLCGHNCASPCHDGPCLDSPCKEMVKVTCECGHRFTTRACFDNVKEYQRMATSLLASKMADMQLGHSVDIGDLLSNPTTRKMSLKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449158;
- 90% Identity
- iTF_01449158;
- 80% Identity
- -