Basic Information

Insect: Timema podura
Gene Symbol: -
Assembly: GCA_033556935.1
Location: JAVRXN010000006.1:8415426-8420045[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 6.2e-05 0.012 17.8 2.4 1 23 153 175 153 175 0.97

2 8 0.00036 0.069 15.4 7.6 1 23 181 203 181 203 0.96

3 8 5.1e-05 0.0099 18.1 5.3 1 23 209 231 209 231 0.99

4 8 4.8e-06 0.00092 21.3 2.2 1 23 237 259 237 259 0.97

5 8 1.7e-06 0.00033 22.7 0.5 1 23 265 287 265 287 0.97

6 8 2.3e-06 0.00044 22.3 0.1 1 23 293 315 293 315 0.98

7 8 0.00037 0.072 15.3 1.4 1 23 320 342 320 342 0.97

8 8 4.1e-06 0.00079 21.5 0.6 1 23 349 371 349 371 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	6.2e-05	0.012	17.8	2.4	1	23	153	175	153	175	0.97
2	8	0.00036	0.069	15.4	7.6	1	23	181	203	181	203	0.96
3	8	5.1e-05	0.0099	18.1	5.3	1	23	209	231	209	231	0.99
4	8	4.8e-06	0.00092	21.3	2.2	1	23	237	259	237	259	0.97
5	8	1.7e-06	0.00033	22.7	0.5	1	23	265	287	265	287	0.97
6	8	2.3e-06	0.00044	22.3	0.1	1	23	293	315	293	315	0.98
7	8	0.00037	0.072	15.3	1.4	1	23	320	342	320	342	0.97
8	8	4.1e-06	0.00079	21.5	0.6	1	23	349	371	349	371	0.96

Sequence Information

Coding Sequence: ATGAATGAAAGTCTTCAGCAAAATGGGGCGCATCAATCTCATAACGTCCCAAGGAAACACcatgacatttttaatatcGCCTGCGAGAAAGGTTGCAATTGCGAAGCGGCTAATTCTATATTCCGTACCGGTAACGGTCTGATGTTTGCCGCCGACAAGCACGCTGCTACGAAGCACTTCATGACCCCGTGTGGTCCTCTACAACTGACTGCGCAAGAGTGCGGAGAGTTTCTGTTGAAAAAAGTGGCGTCGGGCAACAGTCTCGTGAACCCAGATGCCGCCCATATTAACAATCAAAATGCTTCGAACGAAAGTAACACTGTGCAACGTAAGAACAGACAGACCGGGGTATCTGGTAACACTGGCGTTATGCACCAGGGCACCAGCACCGAGAACGGTGGCAAACTCATGCCTCTGCCGACGGGCCAGAAGTACCGCGTGGCAAAGGAGCGTCCTTTCACCTGTCCAGAGTGTGGCAAGTCGTTCCTTCTGAAGCACCACCTGGTGACTCACGCTCGCGTTCACACGGGAGAGCGGCCCCACATATGCACCGAGTGCGGCAAGAGCTTCGCTCACAAGCACTGTCTGAGCACTCACCTCCTGCTGCATAGCAGCGACCGCCCGTATAAATGCATGGAGTGCAAGAAGTCGTTTACGTTGAAGCACCACCTGGTGACTCATGCCAGGGTGCATAGCAGAGATCGGCCATTTGTTTGCCAGGAGTGTGGACGGACGTTCCCGCAGAAGCGACACTTGGTGACCCACGTCAAGTTCCACTCGGGCGAGCGGCCATACGTCTGCGAGGAGTGTGGAGAGTCCTTTGCCCAGAAGGATCACTTAGTGATTCACTCCCGCTTCCACGGGGGGCAGCACCCATACGTCTGCCCAGACTGTGGCGCGACGTTCGCCCGCAAGTTTGAGCTGGTCAACCACGGCCGACTGCATGGCCGCCAGCCGCACTCGTGCGAGGTGTGCGGCAAGGAGTTCTTGCAGAAGCGCACGCTTCTGGCGCACACCCGCCTCCACGTGGAGGGCGACCGCCCATTTGTGTGCCAGCACTGCGGGGAGACATTTGCGCGCAAGGCCGAGCTGACTGACCACTCGAGTATCCACACTGAAGAGGGCAAGTCCTTCGTGTGCAGGTAG
Protein Sequence: MNESLQQNGAHQSHNVPRKHHDIFNIACEKGCNCEAANSIFRTGNGLMFAADKHAATKHFMTPCGPLQLTAQECGEFLLKKVASGNSLVNPDAAHINNQNASNESNTVQRKNRQTGVSGNTGVMHQGTSTENGGKLMPLPTGQKYRVAKERPFTCPECGKSFLLKHHLVTHARVHTGERPHICTECGKSFAHKHCLSTHLLLHSSDRPYKCMECKKSFTLKHHLVTHARVHSRDRPFVCQECGRTFPQKRHLVTHVKFHSGERPYVCEECGESFAQKDHLVIHSRFHGGQHPYVCPDCGATFARKFELVNHGRLHGRQPHSCEVCGKEFLQKRTLLAHTRLHVEGDRPFVCQHCGETFARKAELTDHSSIHTEEGKSFVCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00189268;
90% Identity: -
80% Identity: -