Basic Information

Insect: Timema podura
Gene Symbol: -
Assembly: GCA_033556935.1
Location: JAVRXN010000004.1:5934241-5944961[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.066 13 8.3 0.2 2 23 204 226 203 226 0.94

2 10 0.062 12 8.4 1.2 5 23 236 254 232 254 0.92

3 10 3.3e-05 0.0063 18.7 4.8 1 23 260 282 260 282 0.97

4 10 3.8e-07 7.4e-05 24.8 0.4 1 23 288 310 288 310 0.98

5 10 6.7e-07 0.00013 24.0 0.8 1 23 319 341 319 341 0.98

6 10 1.5e-07 2.8e-05 26.1 0.2 1 23 347 369 347 369 0.99

7 10 7e-06 0.0014 20.8 2.6 1 23 375 397 375 397 0.97

8 10 4.9e-05 0.0096 18.1 3.2 1 23 403 425 403 425 0.98

9 10 0.00024 0.046 16.0 1.8 1 23 431 453 431 453 0.98

10 10 0.00021 0.041 16.1 5.8 1 23 459 482 459 482 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.066	13	8.3	0.2	2	23	204	226	203	226	0.94
2	10	0.062	12	8.4	1.2	5	23	236	254	232	254	0.92
3	10	3.3e-05	0.0063	18.7	4.8	1	23	260	282	260	282	0.97
4	10	3.8e-07	7.4e-05	24.8	0.4	1	23	288	310	288	310	0.98
5	10	6.7e-07	0.00013	24.0	0.8	1	23	319	341	319	341	0.98
6	10	1.5e-07	2.8e-05	26.1	0.2	1	23	347	369	347	369	0.99
7	10	7e-06	0.0014	20.8	2.6	1	23	375	397	375	397	0.97
8	10	4.9e-05	0.0096	18.1	3.2	1	23	403	425	403	425	0.98
9	10	0.00024	0.046	16.0	1.8	1	23	431	453	431	453	0.98
10	10	0.00021	0.041	16.1	5.8	1	23	459	482	459	482	0.98

Sequence Information

Coding Sequence: atggCCGAACTGAGTAATTTATGTCGTCTCTGCGCTGTTAAGGTTGACGATTATATAGGGATTTATGAGGAAGAGGGCCACAAATTAAGTCTCGAAGTTAAAATAacgaaatatttacaaatagagGTGAAACCCAGGGACTCGCTACCCAAGGCCGTGTGTCTGGACTGCTGCACCAAGTTGGACCAGTGCTCCCATTTCCACGAGTCCAGCCTTCAAGCCCAGCTGACGCTACAGATGATCTTCCTGCCTAAATTGGACCACGTGGTTCAGCAACATCTGACGTCCATCGGTAAAGTCGAGGATGTGTTGCAGCAGACACAACCAGTGGAGTTTAACCATTTCGACCATGACACCAGCTCCATGCTTGGGGAAGAGTTTCAGGAACCAAACCTGGACCCCACACCACCGGTGTATGTGGAGTGTGTGCTCTCTGACAACCATAATAATGCCAATTCCCTCAGTGCGCCCAAGACACGCTGGACGCCAAGAAGGAACCGGCCGATCAGAGCGGGtcgaggaggaggaggagaagaGGAGGAATACATAGAAGAGGAGGAGCCCCTATCCTCGAGGAAGCGCCGGGATGGTTGGGACAAGTTCCCTTGGAGGTGCACCGATTGTCCCCAGGAACTGCCGAACATGCAAGCTTTGAGAAGCCACCACCAGGAGGCCCACAAACAGACAGTGCGCTTCCTCTGTATCCAGTGCAAGAAGGTTTACACCAAGTATTACGGCTTTGTCAGCCACGTCCGCAGACACAAGAACCACATGAAGTTCTGCTGTGAGGAATGTGGCAAGTGCTTCTCCAACAAGAAGGTGCTAGAGTCCCACCGCGCCACGCACTCAGACGCTCGGCCATACGTCTGCAGTGAGTGCGGCAAAGCCTTCAGGCAGCAGAGCGCGCTGTACGTTCACAACCGCTCGCATCAACCCGACGAGGTCAAGAACAAGTACCCTTGCGACCAGTGCGACAAGAAGTTCTCGACGAAGCCCAACCTGGTGACTCACAAGAGGATCCACACAGGGATACGGAACTACACGTGCGACCAGTGCGGCAAGTCCTTCATCCAGAAGGGGAACCTAGATGCTCACCTCCTCACACACTCGTCGGACAAACCTCACACCTGTACCATATGCAACAAGGGGTTCAAGACGCCCTTGCAACTGCGGAAACACCAGACTGTGCACACGGGCGCCAAACCACATCAGTGTGACGTGTGTGGCCGGCAGTTCAGGGAGCGAGGGACCCTAAGAGAGCACCATCGCATCCATACTGGTGCCATGCCCTTCACTTGCGAGTTTTGTGGCAAGGCGTTCCGCTTCAAGGGCATCCTTACGACCCACCGCAGACAGCACACGGGGGAGCGTCCCTACAGCTGTCTCGAGTGTCAGCATCACTTCACCAACTGGCCCAACTACAACAAACACATGAAGAGACGTCACGGGATAAACACGAGCCACCAACCCGACCCCAACAAGCTTGCCCTCGCCAACATGGCCAACCTCCAACAGCAACAACAGCAACAGCCCCAACAGCATCACCACCACAGTGTCGCCACTACACCCGACCACCTCGGGCCTGACCTCTCTCTTTATGAGGACGACCGGGAGAGGGGTCCCGCCTCCTCCACACACTTCTACGCGGCAGCCGCGGGTCTTCCCAGCGTGGGGGCGTACATGAGTGCCCCTTTGAACGCCTCCTCCATGTTGGGATTTTATAACATTCCCCAGTTGCAAGGGTTAGACCCTTCTGCCATGGACATGTTGCACCCCCTCCAGCATCGGTAG
Protein Sequence: MAELSNLCRLCAVKVDDYIGIYEEEGHKLSLEVKITKYLQIEVKPRDSLPKAVCLDCCTKLDQCSHFHESSLQAQLTLQMIFLPKLDHVVQQHLTSIGKVEDVLQQTQPVEFNHFDHDTSSMLGEEFQEPNLDPTPPVYVECVLSDNHNNANSLSAPKTRWTPRRNRPIRAGRGGGGEEEEYIEEEEPLSSRKRRDGWDKFPWRCTDCPQELPNMQALRSHHQEAHKQTVRFLCIQCKKVYTKYYGFVSHVRRHKNHMKFCCEECGKCFSNKKVLESHRATHSDARPYVCSECGKAFRQQSALYVHNRSHQPDEVKNKYPCDQCDKKFSTKPNLVTHKRIHTGIRNYTCDQCGKSFIQKGNLDAHLLTHSSDKPHTCTICNKGFKTPLQLRKHQTVHTGAKPHQCDVCGRQFRERGTLREHHRIHTGAMPFTCEFCGKAFRFKGILTTHRRQHTGERPYSCLECQHHFTNWPNYNKHMKRRHGINTSHQPDPNKLALANMANLQQQQQQQPQQHHHHSVATTPDHLGPDLSLYEDDRERGPASSTHFYAAAAGLPSVGAYMSAPLNASSMLGFYNIPQLQGLDPSAMDMLHPLQHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01446875;
90% Identity: iTF_01445049;
80% Identity: -