Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010001582.1:99038-110565[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.079 18 8.2 0.2 2 23 227 249 226 249 0.94

2 10 0.074 17 8.3 1.2 5 23 259 277 255 277 0.92

3 10 3.9e-05 0.0088 18.6 4.8 1 23 283 305 283 305 0.97

4 10 4.6e-07 0.0001 24.7 0.4 1 23 311 333 311 333 0.98

5 10 8e-07 0.00018 23.9 0.8 1 23 342 364 342 364 0.98

6 10 1.7e-07 3.9e-05 26.0 0.2 1 23 370 392 370 392 0.99

7 10 8.4e-06 0.0019 20.7 2.6 1 23 398 420 398 420 0.97

8 10 5.9e-05 0.013 18.0 3.2 1 23 426 448 426 448 0.98

9 10 0.00028 0.063 15.9 1.8 1 23 454 476 454 476 0.98

10 10 0.00025 0.057 16.1 5.8 1 23 482 505 482 505 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.079	18	8.2	0.2	2	23	227	249	226	249	0.94
2	10	0.074	17	8.3	1.2	5	23	259	277	255	277	0.92
3	10	3.9e-05	0.0088	18.6	4.8	1	23	283	305	283	305	0.97
4	10	4.6e-07	0.0001	24.7	0.4	1	23	311	333	311	333	0.98
5	10	8e-07	0.00018	23.9	0.8	1	23	342	364	342	364	0.98
6	10	1.7e-07	3.9e-05	26.0	0.2	1	23	370	392	370	392	0.99
7	10	8.4e-06	0.0019	20.7	2.6	1	23	398	420	398	420	0.97
8	10	5.9e-05	0.013	18.0	3.2	1	23	426	448	426	448	0.98
9	10	0.00028	0.063	15.9	1.8	1	23	454	476	454	476	0.98
10	10	0.00025	0.057	16.1	5.8	1	23	482	505	482	505	0.98

Sequence Information

Coding Sequence: atggcCGAACTGAGTAATTTATGTCGTCTCTGCGCTGTTAAGGTTGACGATTATATAGGGATCTATGAGGAAGAGGGCCACAAATTAAGTCTCGAAGTTAAAATAacgaaatatttacaaatagagGTGAAACCCAGGGACTCGCTACCCAAGGCCGTGTGTCTGGACTGCTGCACCAAGTTGGATCAGTGCTCCCATTTCCACGAGTCCAGCCTTCAAGCCCAGCTGACGCTACAGATGATCTTCCTGCCTAAATTGGACCACGTGGTTCAGCAACATCTGACGTCCATTGGTAAAGTGGAGGATGTGTTGCAGCAGACGCAACCAGTGGAGTTTAACCATTTCGACCATGACACCAGCTCCATGCTTGGAGAAGAGTTTCAGGAACCAAACCTGGACCCCACACCACCGGTGTATGTGGAGTGCGTGCTCTCGGACAACCACAATAATACCAATTCCCTCAAAGATGGCGCGGGTCTGTCCAACCTAGTAGCACCCTCCAAGCGCAAGTGCCGCACTCCGGTCAGGTGCGCCCAAGACACGCTGGATGCCAAGAAGGAACCGGCCGATCAAGAGCGGGtcgaggaggaggaggaggaggaagaggagGAATACATAGGAGAGGAGGAGCCCCTATCCTCGAGGAAGCGCCGGGATGGTTGGGACAAGTTCCCTTGGAGGTGCACCGATTGTCCCCAGGAACTGCCGAACATGCAAGCTTTGAGAAGCCACCACCAAGAGGCCCACAAACAGACAGTGCGCTTCCTCTGTATCCAGTGCAAGAAGGTTTACACCAAGTATTACGGCTTTGTCAGCCACGTCCGCAGACACAAGAACCACATGAAGTTCTGcTGTGAGGAATGTGGCAAGTGCTTCTCCAACAAGAAGGTGCTAGAGTCCCACCGCGCCACGCACTCAGACGCTCGGCCATACGTCTGCAGTGAGTGCGGCAAAGCCTTCAGGCAGCAGAGCGCGCTGTACGTTCACAACCGCTCGCATCAACCCGACGAGGTCAAGAACAAGTACCCTTGCGACCAGTGCGACAAGAAGTTCTCGACGAAGCCCAACCTAGTGACCCACAAGAGGATCCACACAGGGATACGGAACTACACGTGCGACCAGTGCGGCAAGTCCTTCATCCAGAAGGGGAACTTGGATGCTCACCTCCTCACACACTCGTCGGACAAACCTCACACCTGTACCATATGCAACAAGGGATTCAAGACGCCCCTGCAACTGCGGAAACACCAGACTGTGCACACGGGCGCCAAACCGCATCAGTGTGACGTGTGTGGCCGGCAGTTCAGGGAGCGAGGGACCCTAAGGGAACACCATCGCATCCATACTGGGGCCATGCCCTTCACTTGCGAGTTTTGTGGCAAGGCGTTCCGCTTCAAGGGCATCCTTACGACCCACCGCAGACAGCACACGGGGGAGCGTCCCTACAGCTGTCTCGAGTGTCAGCATCACTTCACCAACTGGCCCAACTACAACAAACACATGAAGAGACGTCACGGGATAAACACGAGCCACCAACCCGACCCCAACAAGCTTGCCCTCGCCAACATGGCCAACCTCCAACAGCAACAACAGCAACAGCCCCAACAGCATCACCACCACAGTGTCGCCACTACACCCGACCACCTCGGGCCTGACCTCTCTCTTTATGAGGATGACCGGGAGAGGGGCCCCGCCTCCTCCACGCACTTCTACGCGGCAGCCGCGGGTCTTCCCAGCGTGGGGGCGTACATGAGTGCCCCTTTGAACGCCTCCTCCATGTTGGGCTTTTATAACATTCCCCAGTTGCAAGGGTTAGACCCTTCTGCCATGGACATGTTGCACCCCCTCCAGCATCGGTAG
Protein Sequence: MAELSNLCRLCAVKVDDYIGIYEEEGHKLSLEVKITKYLQIEVKPRDSLPKAVCLDCCTKLDQCSHFHESSLQAQLTLQMIFLPKLDHVVQQHLTSIGKVEDVLQQTQPVEFNHFDHDTSSMLGEEFQEPNLDPTPPVYVECVLSDNHNNTNSLKDGAGLSNLVAPSKRKCRTPVRCAQDTLDAKKEPADQERVEEEEEEEEEEYIGEEEPLSSRKRRDGWDKFPWRCTDCPQELPNMQALRSHHQEAHKQTVRFLCIQCKKVYTKYYGFVSHVRRHKNHMKFCCEECGKCFSNKKVLESHRATHSDARPYVCSECGKAFRQQSALYVHNRSHQPDEVKNKYPCDQCDKKFSTKPNLVTHKRIHTGIRNYTCDQCGKSFIQKGNLDAHLLTHSSDKPHTCTICNKGFKTPLQLRKHQTVHTGAKPHQCDVCGRQFRERGTLREHHRIHTGAMPFTCEFCGKAFRFKGILTTHRRQHTGERPYSCLECQHHFTNWPNYNKHMKRRHGINTSHQPDPNKLALANMANLQQQQQQQPQQHHHHSVATTPDHLGPDLSLYEDDRERGPASSTHFYAAAAGLPSVGAYMSAPLNASSMLGFYNIPQLQGLDPSAMDMLHPLQHR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01446875;
90% Identity: iTF_01447811; iTF_01449859; iTF_01448851; iTF_01446875;
80% Identity: -