Basic Information

Insect: Timema podura
Gene Symbol: -
Assembly: GCA_033556935.1
Location: JAVRXN010000011.1:64170405-64191603[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.016 3.1 10.2 0.3 5 23 342 361 337 361 0.87

2 15 0.0031 0.59 12.5 3.5 1 23 439 462 439 462 0.98

3 15 1.8 3.6e+02 3.7 2.2 1 23 473 496 473 496 0.92

4 15 0.02 3.9 9.9 3.3 1 23 502 525 502 525 0.93

5 15 0.9 1.7e+02 4.7 1.3 2 23 532 554 532 554 0.94

6 15 0.0017 0.33 13.3 2.4 1 23 562 585 562 585 0.97

7 15 0.00047 0.09 15.0 1.2 1 23 591 613 591 613 0.96

8 15 4.5e-06 0.00086 21.4 0.4 2 23 620 641 619 641 0.97

9 15 7.8e-08 1.5e-05 26.9 2.5 1 23 646 668 646 668 0.98

10 15 0.00023 0.045 16.0 4.8 1 23 674 696 674 696 0.99

11 15 1.5e-05 0.0029 19.8 1.9 2 23 703 724 702 724 0.97

12 15 4.3e-05 0.0083 18.3 0.4 2 23 731 752 730 752 0.96

13 15 0.00092 0.18 14.1 0.3 3 23 760 781 759 781 0.92

14 15 3.4e-05 0.0065 18.6 0.1 1 23 787 809 787 809 0.98

15 15 0.0011 0.2 13.9 0.9 2 23 816 838 815 838 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.016	3.1	10.2	0.3	5	23	342	361	337	361	0.87
2	15	0.0031	0.59	12.5	3.5	1	23	439	462	439	462	0.98
3	15	1.8	3.6e+02	3.7	2.2	1	23	473	496	473	496	0.92
4	15	0.02	3.9	9.9	3.3	1	23	502	525	502	525	0.93
5	15	0.9	1.7e+02	4.7	1.3	2	23	532	554	532	554	0.94
6	15	0.0017	0.33	13.3	2.4	1	23	562	585	562	585	0.97
7	15	0.00047	0.09	15.0	1.2	1	23	591	613	591	613	0.96
8	15	4.5e-06	0.00086	21.4	0.4	2	23	620	641	619	641	0.97
9	15	7.8e-08	1.5e-05	26.9	2.5	1	23	646	668	646	668	0.98
10	15	0.00023	0.045	16.0	4.8	1	23	674	696	674	696	0.99
11	15	1.5e-05	0.0029	19.8	1.9	2	23	703	724	702	724	0.97
12	15	4.3e-05	0.0083	18.3	0.4	2	23	731	752	730	752	0.96
13	15	0.00092	0.18	14.1	0.3	3	23	760	781	759	781	0.92
14	15	3.4e-05	0.0065	18.6	0.1	1	23	787	809	787	809	0.98
15	15	0.0011	0.2	13.9	0.9	2	23	816	838	815	838	0.94

Sequence Information

Coding Sequence: ATGAGACGGCATTTGAGTGATAATAAGATGGAGACTGAAGAGGAAGTATCTAAAGGAGGGGGAAGTGACACAGATGGCAACATCCCTGCGGCCTCTGACCTTCCTTTGTGTGTCCCACATTTGTTGGCCCCGGCCCCTATCCCTTGTCAATCACTAATAACCAAGGCTTGGTCATCTCCCACTCCTGCATCATCTCTTCAAATTAGTGGCCCATCGGCGAAAAGTAAAAAGGAAGATTCCAACTTTGGAGATCAAATTGATGGATCTGAGAAATTCAACTCCGATTCTTCATTTGAGCCTTCTTCAGATGAGTTTTTGGTTGGCTCTGGAGGAGAGAATGAAGAACTATctgatgaagaagaagaagaatggaaaccAGATGTAATAGCGAATTTAAACGATGAACCAATTGAGGCACAAATAGATCCAACAGAAGTAGAATGTGTAATGAATGACACTAGTGACGATGAATTTTATGATGATACCTCACCTATACTGGAAGATAATGAAGGAagtgataattttatttcaaatatgcaGATAAATCAAGAAAAAATAGAGGCCATGATTGACAGCTTGAACACTGGTCTTGATGAGGCAAGTCATGAAAAGAATGCGGAGACGAGCTCAGAAAACTTAAGAAAGATATCAACACTATCCTCAGGGGAAAGCCAGCCCTTAACACTAGACACAGACACTGTTGAAGATCAGATAGAAAAGATGTTTCAGGACCCTTCCAAAACCACAGAACAGCTCGGTGAGCCTGCTACTTCCAATGGGAAAGTTGCCAGTCGGGAAAGCTGGGAAGCTGCAGATGTTCTAATGGCTATCAAGCAAGAGCCAGGAACTGATGTAGATGGTAACTTTCCATTCCCAAGCCAAAAGAAAAATGGTAAAGAAATGTTTTGTGAAATTTGCTGTGGTCCATGTCCAGGGCTAGAAGAATTATTGCAGCACTTAAATACTGTCCATAATTTTTCTATCATGGCTTTGGGCGGTGAAAGTAGATTCACTTGTATAGAGGagtgtgataaaatatttaattctcaaGCCTTGCTGgacaaacataaaaaagaaGTGCATAAAATTACCAAAGTGACGACAACGTTCCAATGTCCGTTCTGTGCTGTTCAAGCAGAGACGAAAATCACTGTGAGACAGCACATTTTTGACTTTCACAACAATGATTTGATGTCGGAACCTCCACAGAGACCATTTGCTTTCCCATGTCGATGTTGTGCAAAAAAGTTTTGGCATGTTGAAGAAAGAAATCAACATCAGATGGATGAGCATTCCGACACTATTGAAAGTTTCTTCAAGTGCTACATATGCCTTCAATCATATACAAGCAAGGTATGTTTGAATCGTCATGTCTTGACAACACATCCTGGTGAACAGCGCTACTCTCCTCTCTCGTACAAGTGCAAGCTGTGTCTTGTCATGTTTCCCAGTGTGGCCAAGATGTGCAAACATTTCCAGGACTCTCACCCCGCCGCTCTCGTCTTCCTTTGCCGTTTCTGCAACATGactctaaaaacaaaaaaaactctcaaGACTCACATTAAGAACATGCACTCACAGGCTCGCCAACGTGAGTGCCATCTTTGTGGCAAAATGCTATTGAGTAAACGAGCGTATGCGATACATTTCCGCATGAAGCACAGTGCAATCTCCAGAGTAGGCTTCCGCTGCCGTATCTGTCAAAAGAGATTTGACTCTAAGGATGAGAGAAAGCTGCACTATCAAATGGACCATGAAGGTGAAAGCCCGTATCACTGCACAGACTGTGGTAAAGGCTTTGCCTCCAAGTCGGGCATGTACGGGCACAGGCAGCTGCATACAGGAACTGGCGTGTCAACCTGCGGTTACTGCGGCAAGGCTTTCACACGCAAGGACAGCTACAACGAACACTTATTGATCCACAATGGGCCACGGCACAAGTGCCCTCACTGTCCTAAAGAATTTGTGCAACGCTCTAACTTGGTGCGACATATTCGTATCCACACAGgCGAAAAACCTTATAAATGCTTGTATTGTGACAAGTGTTTTTCTGACAAAGGGGCGTGCAACTCACATATCCGTGTTCACACCCGTGAGGAAACCTCTTCTTGTCCTTATTGCGGTCAAACATATTCCAAAAAACAGaAATTGAAGTACCATATTCGTAAACACACAGGAGAAGGTTTAATCACTTGTGAAATTTGCAACAAGcaATTTACAAACAGTTTTGCCTTGAAAGAACATCGTATCATTCATGATAGACAAACCCAAATCTTGTGTCGTCGTTGTGGAAAAGCTTTCAACAGTGAAAAATATCTACAACGACATGTGGCACTTGTACACGAACCTTCCCACATGTACAACTGCCCACTATGTTCGAAGGCGTTCTCCTTGCCAGGACGATTGAAAGCCCATATCATGACCCACACCGGTGTGAAACACATGAAGTGCCTCCTTTGCGACAAAGCGTACTCTGTTCGTAAGTCTCTACGTAAACACTTGTTAGAGAAACACAATGTGGGTCATGACCATCCCCACTACAAACGTTGTTTCTATGCAATGTCTCCTGAGGAAGCAGGTCTAGACATTCCCTCAGATATCCCGAGGGTTCGTGTATCCCCTGCAGGTAGTGAGGATGAGCCTGCGATCCCAATCTTCCGCAAACAAGAAGTTAAAAAGAAAGTGAAAAAGCCCCGAGGGACAGGTCGTAGGGGGCGACCTCCTGGCAGTGGTAAAAAACAGAAACAGAGTGGGGATCCCTCTCTAGTAACCTCCCCGAAACGAGGTAGGGGTAGGGGTAGAGGCAGAGGTGGTGGTAGGGGAAGGGGTAGAGGTCGTCCACCCAAATCTCTTTCTATAGTTGTTAGTCCAGAACCATCAACATCTACCGGTACAGAATCTCAAAGAGTTTTGAGGAGGAAACCATCACCAAAGAAATTTGAAATCAAGCAAGAACCAGACTCCGAAGAAGATAGTGATTCAAATAATATGCTCTCTATGGCGCTCCAAGATGAAAAATCTCATAGTAGCACAGACTCTTACGAAGAGAAAATAACGAAGAAGAGGAGTGTTGGGAATAGGAAAATATCCCCAATGGAATATCATTCATCGGCTCCTACTTTGTCTCCTGAAAACAAAGAGATGTTGTTGAACCTTGTAGGAGCAACTGGCCAGAAGAAGCGAAGAGTGGAGGCGATTGTCGAGATCCTTCAGAAGTATACCAACACCGGAGCCGAGGGAAACTCAAAGGATGGTACCGGCGAAGATATCAAAGATGAGGATCAAAGACAAGAAACTCGCAGTAGACATGACAAGGAAAGCACGGAAGATAgaggatcgagtgacgaaggtGAAGGTCTGGTTGGTAATTATACAAAGGTTGATGTGCAAgggaaaataaaagaagaagaatgttcATTAGGAAGCAGTAGCGGGTCTAGTGTAGACCAACAGGATGTAAGTGATGAGGCTGAGGATAATGGGCCGGTCTTAGCACGCTTCAGTGCACTGGACAGTCCAAAAGTTAAATCAACACCATTGTCGCCATTAAAAATTAGGTTTCGAACACAATCATATGATGAGGAAGAGGAAGAAGATGGTGGCGATGAGGATGATGAGGATACTGATGAGAATGGGGTGGATGCagatgatgatgacgacgatGAGTCCAGCTAG
Protein Sequence: MRRHLSDNKMETEEEVSKGGGSDTDGNIPAASDLPLCVPHLLAPAPIPCQSLITKAWSSPTPASSLQISGPSAKSKKEDSNFGDQIDGSEKFNSDSSFEPSSDEFLVGSGGENEELSDEEEEEWKPDVIANLNDEPIEAQIDPTEVECVMNDTSDDEFYDDTSPILEDNEGSDNFISNMQINQEKIEAMIDSLNTGLDEASHEKNAETSSENLRKISTLSSGESQPLTLDTDTVEDQIEKMFQDPSKTTEQLGEPATSNGKVASRESWEAADVLMAIKQEPGTDVDGNFPFPSQKKNGKEMFCEICCGPCPGLEELLQHLNTVHNFSIMALGGESRFTCIEECDKIFNSQALLDKHKKEVHKITKVTTTFQCPFCAVQAETKITVRQHIFDFHNNDLMSEPPQRPFAFPCRCCAKKFWHVEERNQHQMDEHSDTIESFFKCYICLQSYTSKVCLNRHVLTTHPGEQRYSPLSYKCKLCLVMFPSVAKMCKHFQDSHPAALVFLCRFCNMTLKTKKTLKTHIKNMHSQARQRECHLCGKMLLSKRAYAIHFRMKHSAISRVGFRCRICQKRFDSKDERKLHYQMDHEGESPYHCTDCGKGFASKSGMYGHRQLHTGTGVSTCGYCGKAFTRKDSYNEHLLIHNGPRHKCPHCPKEFVQRSNLVRHIRIHTGEKPYKCLYCDKCFSDKGACNSHIRVHTREETSSCPYCGQTYSKKQKLKYHIRKHTGEGLITCEICNKQFTNSFALKEHRIIHDRQTQILCRRCGKAFNSEKYLQRHVALVHEPSHMYNCPLCSKAFSLPGRLKAHIMTHTGVKHMKCLLCDKAYSVRKSLRKHLLEKHNVGHDHPHYKRCFYAMSPEEAGLDIPSDIPRVRVSPAGSEDEPAIPIFRKQEVKKKVKKPRGTGRRGRPPGSGKKQKQSGDPSLVTSPKRGRGRGRGRGGGRGRGRGRPPKSLSIVVSPEPSTSTGTESQRVLRRKPSPKKFEIKQEPDSEEDSDSNNMLSMALQDEKSHSSTDSYEEKITKKRSVGNRKISPMEYHSSAPTLSPENKEMLLNLVGATGQKKRRVEAIVEILQKYTNTGAEGNSKDGTGEDIKDEDQRQETRSRHDKESTEDRGSSDEGEGLVGNYTKVDVQGKIKEEECSLGSSSGSSVDQQDVSDEAEDNGPVLARFSALDSPKVKSTPLSPLKIRFRTQSYDEEEEEDGGDEDDEDTDENGVDADDDDDDESS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447821;
90% Identity: -
80% Identity: -