Tpod028002.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000008.1:22788353-22824466[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.6e-05 0.003 19.7 1.0 1 23 433 455 433 455 0.96 2 18 0.012 2.3 10.6 3.3 1 20 461 480 461 483 0.93 3 18 6.3e-06 0.0012 20.9 1.2 1 23 489 511 489 511 0.99 4 18 8.2e-05 0.016 17.4 3.5 1 21 517 537 517 539 0.94 5 18 0.00017 0.032 16.5 4.7 1 23 545 567 545 567 0.99 6 18 3.3e-05 0.0063 18.7 5.3 1 23 573 595 573 595 0.97 7 18 1.6e-06 0.00031 22.8 3.9 1 23 601 623 601 623 0.96 8 18 1.2e-07 2.3e-05 26.3 2.7 1 23 629 651 629 651 0.98 9 18 9e-05 0.017 17.3 6.7 1 23 657 679 657 679 0.97 10 18 8.9e-05 0.017 17.3 5.7 1 23 685 707 685 707 0.97 11 18 7.4e-07 0.00014 23.9 2.9 1 23 713 735 713 735 0.98 12 18 1.1e-05 0.0021 20.2 7.8 1 23 741 763 741 763 0.98 13 18 3.5e-05 0.0067 18.6 9.1 1 23 769 791 769 791 0.98 14 18 1.1e-05 0.0021 20.2 7.7 1 23 797 819 797 819 0.98 15 18 0.0048 0.93 11.9 10.6 1 21 825 845 825 847 0.94 16 18 0.00031 0.059 15.6 0.2 1 23 853 875 853 875 0.97 17 18 0.04 7.7 9.0 4.5 1 23 885 907 885 907 0.98 18 18 8.6e-07 0.00017 23.6 0.9 1 23 913 935 913 935 0.96
Sequence Information
- Coding Sequence
- atgggTGTATTTGATTGGCTACTGGTGCCTTTCTTACAAGCCCAGTGGTCAGCTTATATACTGATGCAGGCGAACAAACAACCTCTTTATATCATAACACACCTCATAGCTTCCTTCAGAGCGAAACATCACTGCATGCCTCGAAAAGAGCAGAGACATGCGGGAACACCGACAGACCTGCGCGTGGGCACGGCTGTAGCTCTCTCCAGTGTTGCCAAGTATTGGGTACTAACTAATCTCTTCCCAGGACCCATCCCACAAGTATCGGTGTATGGACTGCATCCACCACGGCCTTGTGATGGAAGCAAGCCCCAGGACGGGTTGAGCCAGCATCAGCAACATTGCTTACCTGCCTTGCCCCCTCCTCCTGGTGTAAACATGGCAACTGACACTATGTCACTTCTTCCACAGCACCCTCACTCGCAGGTAGCAGGTCTTCACATGGACCAAGGGCCGCTAGATAACTCTGACAAGAATAAGATTGACAAGGGAACATGCACTGTGGAAAGATGTGGCGACAACCAGGTACATTGTCAActtgTCAACTCTGTACAGTCTCATCACCAAGCAAATGAACAAATGGCATCAACTCAGCAGAACATGAACCACCAGCAACAACACATTTCTCAGCCACATCATCAACAGCAGCAGCAACATTTACAACAgcaacaacagcaacaacaacaacagcaaCACCAACAGcagGCACTATATCGAATTGCGCAGCTTGCTCAACAGCAACAACAGCAGCCTCATCAGCACCAACAACAACCTCATCAACACCAGCAAGGTCAAACTGAGGCGAATAGAGAACTCCAACAATCCCAAGAGGTGGGTACACAAATGGACTCGGCAGGTGCCTCTGAGGTGAAGGATGAGAAAACTTCAAGCAGTGGGCCATGTGCAAAGGAACTGCGTAGCTTGCCCTGCACAGCTGGATTCCCTGTGCAAGATATGAAAGGTCACATGATGGACATCAGGACTCCAGATGGTAGCATTGTTAAGATCAGTGCTCCTGGCAATGGCGACCAGGAGTTGAGCAAGACCCTTGGTGTGGAGATGGTTCAGAACATGTATAAGGTCAATGTTGAAGATATCAACCAACTCCTTGCCTATCATGAGGTTTTCGGAAAGCTCCAGAATGAGATGGCAGCTGCTGGCGTCCCTGCACAGACTACCCCAACCACCTCAAGCTCAAGCGGGACTGGGGGTAATAAATCATGTACTGGCGAACCGTGCTCTACCAATAGCAGTGTGCCCACCTTACCAACTGCAGTCATCACCACTCCAGGCACGCATATCTGTGACATCTGTGGCAAGATTTTCCCTTTCCGGTACCAACTGATAGTCCATCGCCGCTACCACACTGAGAGGAAGCCATTTACTTGTCAGGTATGTGGGAAAGCCTTCACATGTGCTGCAGAACTCACACGACATGGGAAATGCCACCTTGGTGGCAGTATGTACACATGTTCTGTTTGCTTCCACGTGTTTGCCAATGCAGCTAGCCTGGAGCGTCATATGAAAAGACATGCAACAGACAAACCATATGCGTGCTCGGTATGCGGGAAATCATTTGCTCGCAAAGAGCATTTGGACAATCATACAAGGTGCCACACAGGTGAGACGCCCTATCGTTGTCAGTTCTGTGCCAAGACATTCACACGCAAAGAACACATGGTTAATCATGTACGCAAGCACACAGGCGAGACCCCCCATCGCTGTGATATCTGCAAAAAATCATTCACTCGCAAGGAGCATTTCATGAACCATGTAATGTGGCACACAGGTGAGACACCCCACGCCTGTCAGGTTTGCGGCAAAAAATACACAAGAAAAGAACACTTGGCCAATCACATGCGCTCCCACACCAATGACACACCCTTTCGCTGCGAGATCTGTGGCAAATCATTCACACGGAAGGAGCATTTCACGAACCACATCATGTGGCACACAGGCGAGACGCCGCATCGCTGCGACTTCTGCTCCAAGACTTTCACACGCAAGGAGCACCTGCTGAATCATGTCCGGCAGCATACGGGTGAGTCCCCCCATCGCTGCGGCTTCTGCTCCAAGTCTTTCACTCGCAAGGAGCACTTGGTGAATCATGTGCGCCAACATACTGGTGAGACCCCTTTCCGGTGCCAGTACTGCCCAAAGGCGTTCACACGCAAAGACCATCTGGTGAATCACGTTCGCCAGCACACAGGTGAGTCCCCCCACAAGTGTCAGTATTGCACCAAGTCGTTCACGCGCAAAGAGCACCTGACAAACCACGTGCGTCAGCACACGGGCGAGTCCCCCCATCGCTGCCACTTCTGTTCGAAATCCTTTACTCGCAAAGAGCATCTGACCAACCATGTGCGCATCCACACAGGTGAGTCGCCGCACCGCTGTGAGTTCTGCAACAAGACGTTCACACGCAAGGAACATCTGACCAACCACTTGCGCCAACACACAGGAGAGACACCTCATTGCTGCCACGTCTGCTCCAAACCCTTCACACGCAAAGAGCACCTCGTCAACCACATGCGTTGTCACACGGGTGAGCGCCCCTTCGCTTGCCAGGAATGTGGCAAGGCATTCCCACTCAAGGGCAACTTGCTCTTCCATCAGCGCTCCCACAACAAGGGTGCCGCTGCTGAGCGACCTTTTCGCTGTGACCTTTGTCCCAAGGACTTCATGTGTAAGGGCCACCTAGTTTCTCATCGGCGAAGTCACTCTGGAGATCGGCCCCATGCCTGTCCAGACTGTGGCAAAACATTTGTGGAGAAGGGAAACATGCTACGGCACCTTCGTAAGCACTCTGCAGATGGCCAGAGCCTTCATAACCCACCAGGAGGTGTGGTGGTGCCACCATCACATCACCTGCAGCAGCACCATCCCGTGCCCCCACACGGACCTGTGGTTGTTCCCACGCCTAACGCTGCCGTGCTTTCTACCTACTGA
- Protein Sequence
- MGVFDWLLVPFLQAQWSAYILMQANKQPLYIITHLIASFRAKHHCMPRKEQRHAGTPTDLRVGTAVALSSVAKYWVLTNLFPGPIPQVSVYGLHPPRPCDGSKPQDGLSQHQQHCLPALPPPPGVNMATDTMSLLPQHPHSQVAGLHMDQGPLDNSDKNKIDKGTCTVERCGDNQVHCQLVNSVQSHHQANEQMASTQQNMNHQQQHISQPHHQQQQQHLQQQQQQQQQQQHQQQALYRIAQLAQQQQQQPHQHQQQPHQHQQGQTEANRELQQSQEVGTQMDSAGASEVKDEKTSSSGPCAKELRSLPCTAGFPVQDMKGHMMDIRTPDGSIVKISAPGNGDQELSKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQNEMAAAGVPAQTTPTTSSSSGTGGNKSCTGEPCSTNSSVPTLPTAVITTPGTHICDICGKIFPFRYQLIVHRRYHTERKPFTCQVCGKAFTCAAELTRHGKCHLGGSMYTCSVCFHVFANAASLERHMKRHATDKPYACSVCGKSFARKEHLDNHTRCHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHACQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHVRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCNKTFTRKEHLTNHLRQHTGETPHCCHVCSKPFTRKEHLVNHMRCHTGERPFACQECGKAFPLKGNLLFHQRSHNKGAAAERPFRCDLCPKDFMCKGHLVSHRRSHSGDRPHACPDCGKTFVEKGNMLRHLRKHSADGQSLHNPPGGVVVPPSHHLQQHHPVPPHGPVVVPTPNAAVLSTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01444992;
- 90% Identity
- -
- 80% Identity
- -