Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010000217.1:366870-400208[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.8e-05 0.004 19.7 1.0 1 23 416 438 416 438 0.96

2 18 0.013 3 10.6 3.3 1 20 444 463 444 466 0.93

3 18 7e-06 0.0016 21.0 1.2 1 23 472 494 472 494 0.99

4 18 9.1e-05 0.02 17.5 3.5 1 21 500 520 500 522 0.94

5 18 0.00018 0.041 16.5 4.7 1 23 528 550 528 550 0.99

6 18 3.6e-05 0.0082 18.7 5.3 1 23 556 578 556 578 0.97

7 18 1.8e-06 0.0004 22.8 3.9 1 23 584 606 584 606 0.96

8 18 1.4e-07 3e-05 26.4 2.7 1 23 612 634 612 634 0.98

9 18 0.0001 0.023 17.3 6.7 1 23 640 662 640 662 0.97

10 18 9.9e-05 0.022 17.3 5.7 1 23 668 690 668 690 0.97

11 18 8.3e-07 0.00019 23.9 2.9 1 23 696 718 696 718 0.98

12 18 1.2e-05 0.0028 20.2 7.8 1 23 724 746 724 746 0.98

13 18 3.9e-05 0.0087 18.6 9.1 1 23 752 774 752 774 0.98

14 18 1.2e-05 0.0028 20.2 7.7 1 23 780 802 780 802 0.98

15 18 0.0054 1.2 11.9 10.6 1 21 808 828 808 830 0.94

16 18 0.00034 0.077 15.6 0.2 1 23 836 858 836 858 0.97

17 18 0.044 10 9.0 4.5 1 23 868 890 868 890 0.98

18 18 9.6e-07 0.00022 23.7 0.9 1 23 896 918 896 918 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.8e-05	0.004	19.7	1.0	1	23	416	438	416	438	0.96
2	18	0.013	3	10.6	3.3	1	20	444	463	444	466	0.93
3	18	7e-06	0.0016	21.0	1.2	1	23	472	494	472	494	0.99
4	18	9.1e-05	0.02	17.5	3.5	1	21	500	520	500	522	0.94
5	18	0.00018	0.041	16.5	4.7	1	23	528	550	528	550	0.99
6	18	3.6e-05	0.0082	18.7	5.3	1	23	556	578	556	578	0.97
7	18	1.8e-06	0.0004	22.8	3.9	1	23	584	606	584	606	0.96
8	18	1.4e-07	3e-05	26.4	2.7	1	23	612	634	612	634	0.98
9	18	0.0001	0.023	17.3	6.7	1	23	640	662	640	662	0.97
10	18	9.9e-05	0.022	17.3	5.7	1	23	668	690	668	690	0.97
11	18	8.3e-07	0.00019	23.9	2.9	1	23	696	718	696	718	0.98
12	18	1.2e-05	0.0028	20.2	7.8	1	23	724	746	724	746	0.98
13	18	3.9e-05	0.0087	18.6	9.1	1	23	752	774	752	774	0.98
14	18	1.2e-05	0.0028	20.2	7.7	1	23	780	802	780	802	0.98
15	18	0.0054	1.2	11.9	10.6	1	21	808	828	808	830	0.94
16	18	0.00034	0.077	15.6	0.2	1	23	836	858	836	858	0.97
17	18	0.044	10	9.0	4.5	1	23	868	890	868	890	0.98
18	18	9.6e-07	0.00022	23.7	0.9	1	23	896	918	896	918	0.96

Sequence Information

Coding Sequence: GAGCAGAGACATGCGGGAACACCGACAGACCTGCGCGTGGGCACGGCTGTAGCTCTCTCCAGTGTTGCCAAGTATTGGGTACTAACTAATCTCTTCCCAGGACCCATCCCACAAGTATCGGTGTATGGACTGCATCCACCACGGCCTTGTGATGGAAGCAAGCCCCAGGACGGGTTGAGCCAGCATCAGCAACATTGCTTACCTGCATTGCCCCCTCCTCCTGGTGTAAACATGGCAACTGACACTATGTCACTTCTTCCACAGCACCCCCACTCACAGGTAGCAGGTCTTCACATGGACCAAGGGCCGCTAGATAACTCTGACAAGAATAAGATTGACAAGGGAACATGCACTGTGGAAAGATGTGGCGACAACCAGGTACATTGTCAActtgTCAACTCTGTACAGTCTCATCACCAAGCAAATGAACAAATGGCATCAACTCAGCAGAACATGAACCACCAGCAACAACACATTTCTCAGCCACATCATCAACAGCAGCAGCAACATTTACAACAgcaacaacagcaacaacaacaacagcaacaCCAACAGcagCTGCACAAAAACAAGCGACTTGACAGGGATTTGACTTTTCTCACGCAATACGCTGATGAAGGTAATGATTTTCTAAGCTACATCATCATTGGTGATGATACATGGATGTCTCACATTATGCTGGAATCAAAACAGCAGTCCATGGAGTGGAGGCACACCACATCTTTGAAAAAGCAGAAATTcaaCCCAGACTTAGCACCAAGTGACTTTCACCTCTTCCTGCATTTGAAGCGGCTCCTCGCTGGTCAGCACTACAACAACGATGACGGCTATGTCAAAAGAGCTATGCAACATTTGCTGTCTTCACAAGTGACTTCATTTTATGAAGAGGGTATTCATAACTTGCTCAACAGCAACAACAGCAGCCTCATCAGCACCAACAACAACCTCATCAACACCAGCAAGGTCAAACTGAGGCGAATAGAGAACTCCAACAATCCCAAGAGGTGGGTACACAAATGGACTCAGCAGGTCAATGTTGAAGATATCAACCAACTCCTTGCCTATCATGAGGTTTTCGGAAAGCTCCAGAATGAGATGGCAGCTGCTGGCGTCCCTGCACAGACTACCCCAACCACCTCAAGCTCAAGCGGGACTGGGGGTAATAAATCATGTACTGGCGAACCGTGCTCTACCAATAGCAGTGTGCCCACCTTACCAACTGCAGTCATCACCACTCCAGGCACGCATATCTGTGACATCTGTGGCAAGATTTTCCCTTTCCGGTACCAACTGATAGTCCATCGCCGCTACCACACTGAGAGGAAGCCATTTACTTGTCAGGTATGTGGGAAAGCCTTCACATGTGCTGCAGAACTCACACGACATGGGAAATGCCACCTTGGTGGCAGTATGTACACATGTTCTGTTTGCTTCCACGTGTTTGCCAATGCAGCTAGCCTGGAGCGTCATATGAAAAGACATGCAACAGACAAACCATATGCGTGCTCGGTGTGCGGGAAATCATTTGCTCGCAAAGAGCATTTGGACAATCATACAAGGTGCCACACAGGTGAGACGCCCTATCGTTGTCAGTTCTGTGCCAAGACATTCACACGCAAAGAACACATGGTTAATCATGTACGCAAGCACACAGGCGAGACCCCCCATCGCTGTGATATCTGCAAAAAATCATTCACTCGCAAGGAGCATTTCATGAACCATGTAATGTGGCACACAGGTGAGACACCCCACGCCTGTCAGGTTTGCGGCAAAAAATACACAAGAAAAGAACACTTGGCCAATCACATGCGCTCCCACACCAATGACACACCCTTTCGCTGCGAGATCTGTGGCAAATCATTCACACGGAAGGAGCATTTCACGAACCACATCATGTGGCACACAGGCGAGACGCCGCATCGCTGCGACTTCTGCTCCAAGACTTTCACACGCAAGGAGCACCTGCTGAATCATGTCCGGCAGCATACGGGTGAGTCCCCCCATCGCTGCGGCTTCTGCTCCAAGTCTTTCACTCGCAAGGAGCACTTGGTGAATCATGTGCGCCAACATACTGGTGAGACCCCTTTCCGGTGCCAGTACTGCCCAAAGGCGTTCACACGCAAAGACCATCTGGTGAATCACGTTCGCCAGCACACAGGTGAGTCCCCCCACAAGTGTCAGTATTGCACCAAGTCGTTCACGCGCAAAGAGCACCTGACAAACCACGTGCGTCAGCACACGGGCGAGTCCCCCCATCGCTGCCACTTCTGTTCGAAATCCTTTACTCGCAAAGAGCATCTGACCAACCATGTGCGCATCCACACAGGTGAGTCGCCGCACCGCTGTGAGTTCTGCAACAAGACGTTCACACGCAAGGAACATCTGACCAACCACTTGCGCCAACACACAGGAGAGACACCTCATTGCTGCCACGTCTGCTCCAAACCCTTCACACGCAAAGAGCACCTCGTCAACCACATGCGTTGTCACACGGGTGAGCGCCCTTTCGCTTGCCAGGAATGTGGCAAGGCATTCCCACTCAAGGGCAACTTGCTCTTCCATCAGCGCTCCCACAACAAGGGTGCCGCCGCTGAGCGACCTTTTCGCTGTGACCTTTGTCCCAAGGACTTCATGTGTAAGGGCCACCTAGTTTCTCATCGGCGAAGTCACTCCGGAGATCGGCCCCATGCCTGTCCAGACTGTGGCAAAACATTTGTGGAGAAGGGAAACATGCTACGGCATCTTCGTAAGCACTCTGCAGATGGCCAGAGCCTTCATAACCCACCAGGAGGTGTGGTGGTGCCACCCTCACATCACCTGCAGCAGCACCATCCCGTGCCCCCACACGGACCTGTGGTTGTTCCCACGCCTAACGCTGCCGTGCTTTCTACCTACTGA
Protein Sequence: EQRHAGTPTDLRVGTAVALSSVAKYWVLTNLFPGPIPQVSVYGLHPPRPCDGSKPQDGLSQHQQHCLPALPPPPGVNMATDTMSLLPQHPHSQVAGLHMDQGPLDNSDKNKIDKGTCTVERCGDNQVHCQLVNSVQSHHQANEQMASTQQNMNHQQQHISQPHHQQQQQHLQQQQQQQQQQQHQQQLHKNKRLDRDLTFLTQYADEGNDFLSYIIIGDDTWMSHIMLESKQQSMEWRHTTSLKKQKFNPDLAPSDFHLFLHLKRLLAGQHYNNDDGYVKRAMQHLLSSQVTSFYEEGIHNLLNSNNSSLISTNNNLINTSKVKLRRIENSNNPKRWVHKWTQQVNVEDINQLLAYHEVFGKLQNEMAAAGVPAQTTPTTSSSSGTGGNKSCTGEPCSTNSSVPTLPTAVITTPGTHICDICGKIFPFRYQLIVHRRYHTERKPFTCQVCGKAFTCAAELTRHGKCHLGGSMYTCSVCFHVFANAASLERHMKRHATDKPYACSVCGKSFARKEHLDNHTRCHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHACQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHVRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCNKTFTRKEHLTNHLRQHTGETPHCCHVCSKPFTRKEHLVNHMRCHTGERPFACQECGKAFPLKGNLLFHQRSHNKGAAAERPFRCDLCPKDFMCKGHLVSHRRSHSGDRPHACPDCGKTFVEKGNMLRHLRKHSADGQSLHNPPGGVVVPPSHHLQQHHPVPPHGPVVVPTPNAAVLSTY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01449812;
90% Identity: -
80% Identity: -