Tpod054874.2
Basic Information
- Insect
- Timema podura
- Gene Symbol
- Znf296
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000013.1:17678628-17686506[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00018 0.035 16.3 0.6 2 23 16 36 15 36 0.98 2 20 0.00032 0.061 15.6 0.8 1 23 42 64 42 64 0.98 3 20 0.32 62 6.1 1.0 1 13 70 82 70 84 0.86 4 20 6.2e-06 0.0012 20.9 0.2 1 23 88 110 88 110 0.98 5 20 2.2e-05 0.0042 19.2 2.7 1 23 116 138 116 138 0.98 6 20 2.7e-06 0.00051 22.1 2.2 1 23 144 166 144 166 0.98 7 20 1.5e-07 2.9e-05 26.1 0.4 1 23 177 199 177 199 0.98 8 20 1.9e-06 0.00037 22.6 0.2 1 23 205 227 205 227 0.98 9 20 0.00011 0.021 17.1 0.1 2 23 234 255 234 255 0.97 10 20 1.8e-05 0.0034 19.5 2.2 1 21 261 281 261 282 0.95 11 20 0.00026 0.05 15.8 2.2 1 23 368 390 368 390 0.95 12 20 0.00075 0.15 14.4 1.3 1 23 396 418 396 418 0.98 13 20 0.025 4.9 9.6 0.4 2 23 425 446 424 446 0.95 14 20 0.00058 0.11 14.7 2.7 2 23 453 474 452 474 0.97 15 20 0.00031 0.06 15.6 1.8 1 23 480 502 480 502 0.96 16 20 0.0049 0.94 11.8 0.3 3 23 513 532 512 532 0.98 17 20 4.8e-06 0.00093 21.3 0.6 1 23 537 559 537 559 0.98 18 20 0.00022 0.042 16.1 2.1 1 23 565 587 565 587 0.96 19 20 2.3e-05 0.0044 19.2 4.0 1 23 593 615 593 615 0.97 20 20 0.00031 0.06 15.6 3.4 1 23 621 643 621 644 0.95
Sequence Information
- Coding Sequence
- ATGAAAGTGAAGCGAAGATCAACCAAGAAAAGGCGTGATAGTGGCAAGTGTGAGTTCTGTGGTAAAGGATTTGTTCAAAGTAAGCTGGAGATACACAGGCGCACACATACAGGTGAACGCCCTTTCATGTGTAGTTCCTGCGGCATCACGTTTCTTAGCAACGGCAAGCTCAAATCACACATGAACACCCACAGCGAGGTGAGGCCTCATGCATGCACAACATGCGACCGTAGGTTCAAACGTACCAAGGAGGAAAAAGATTACATATGTAACATCTGCGGGGCAGCATACATACAGAAGTCAAACCTTGTCAATCACAAGAAGAGGCACTTTGGTCAATTCAGTTTCAAATGCCATGTTTGCGACAAGGGTTTTTATAGCAAGACAGAGTTGAAGGAGCATTCGAACATTCACTTGGGCGTGAAACCATTTGTCTGCGAGGTGTGTGGTAAGGCGTACCCGTACAAGCACAATCTAACCACTCACAAGCGCAAGCACGACCCTAAACACACGGTCTCGCCTAATAAGCACCAGTGTGAGGTGTGCGGGAAGGTGTTTGCCCAACGCGGCTCCCTCACTCTCCACATGCGTGCGCACACAGGACAGGCCATCTTTGTGTGCAACATGTGCGGTAAGTCGCTCTCGAGCAAGGCGTCACTCATCGTGCATGAGCGCACACACACTGGAGAGAAGCCAAACGTTTGTGGAACTTGCGGCAAGGCGTTTGCATCCGTCGAGTATCTGAAGATCCATGAGCGCAAACACACCGGAGAGAAACCTCATCGCTGTGATGAGTGTGGGAAATGTTTCACTCAGCGCTCGTCGCTCGGCATTCATAAGAGATGGAAGGAAAAAACTAAGTCCGGTAACTTAACTCGTACGAACAAGAACACGTCTCTGAAGTTAAGCCGTAAGGTCAAGAAGTCGGTGAAGGCAACGCGCCTGCCTAGGCTTAGACGTAATGATAAGGAAGCTAAGGGTAAAGTATCAAACACAGGCCAAGGAGGTGATCTAGATACAGACCCGGGGGTCGACCTGTGGTATAGTATCTACGACATGTACAGGAAGATGGAGTCAAGCGCTGCACTTGCCAATGGCAAGTATCTCTGCAACATATGTGGCAAAATCTGTTCGAGCAAGACTAGTTTCAGGTATCACTTGGAGATTCACAGCGAGGTGCCCAAGTATAAATGTGACGTTTGTGACAAGCAGTTTCAAACATACCCTAGACTCTTCAATCACAGGTTAATTCATAGAAAGAGTAAGGATCAAGTTTGCGATGTGTGTGGGTACTGCACTTATTATAAGGCTGCTCTGGATATACATAAGATGCTCCATTCACAGAAGTTTAAACTTTACTGTGAGATTTGCAGCAAGGGTTTCAAGTCAAAATGCTATTACGACGACCACATGAACACACACACTGGTAACAACCCGTACATTTGCGATATATGTGGGAAGGCGTTCCCTTGCAAAAGCAACTTGGCCAACCACAAGATTCACCACAAACCCGGCTACAAGCCTTACAGCCGCCTCTGCGAGATCTGCGGTATAAGTGTTCAGCGCTCGAGCTACGAGAGCCATCAGCGGCGTCACAACAACGAGATGTACGATTGCGACATTTGCGGTAAGAAGATAACGAAGAAGAATTCTCTGATCACGCATATGCGTATGCACATGAATGACAAACCCCACGCTTGCGAGTTCTGCGGCAAGATGTTCGGCTCGACACGGTATCTCCGCCTTCACCGCCGCGTTCACACCGGCGAGAAGCCTCACATGTGCCAGTTCTGTCAGAAGAGTTTTTCTCAACGGTCGTCTCTCATCATTCATACAAGGAACCACACCGGCGAGAAGCCCTATACTTGTGACATTTGCAATCATGGGTTTGTTAGCAGAAATCAGTTGACCAATCACAACCGAGCTCATCATTCTGAGCAGTCTCAGAAGTACAGGAAGTTTCTTGTTAACGACGAGAGAACTCTTACAGATAACGTTTTAGTTTAA
- Protein Sequence
- MKVKRRSTKKRRDSGKCEFCGKGFVQSKLEIHRRTHTGERPFMCSSCGITFLSNGKLKSHMNTHSEVRPHACTTCDRRFKRTKEEKDYICNICGAAYIQKSNLVNHKKRHFGQFSFKCHVCDKGFYSKTELKEHSNIHLGVKPFVCEVCGKAYPYKHNLTTHKRKHDPKHTVSPNKHQCEVCGKVFAQRGSLTLHMRAHTGQAIFVCNMCGKSLSSKASLIVHERTHTGEKPNVCGTCGKAFASVEYLKIHERKHTGEKPHRCDECGKCFTQRSSLGIHKRWKEKTKSGNLTRTNKNTSLKLSRKVKKSVKATRLPRLRRNDKEAKGKVSNTGQGGDLDTDPGVDLWYSIYDMYRKMESSAALANGKYLCNICGKICSSKTSFRYHLEIHSEVPKYKCDVCDKQFQTYPRLFNHRLIHRKSKDQVCDVCGYCTYYKAALDIHKMLHSQKFKLYCEICSKGFKSKCYYDDHMNTHTGNNPYICDICGKAFPCKSNLANHKIHHKPGYKPYSRLCEICGISVQRSSYESHQRRHNNEMYDCDICGKKITKKNSLITHMRMHMNDKPHACEFCGKMFGSTRYLRLHRRVHTGEKPHMCQFCQKSFSQRSSLIIHTRNHTGEKPYTCDICNHGFVSRNQLTNHNRAHHSEQSQKYRKFLVNDERTLTDNVLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448781;
- 90% Identity
- iTF_01448781;
- 80% Identity
- -