Tmon002671.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- Znf296
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010000054.1:659605-677209[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00023 0.047 16.2 0.6 2 23 39 59 38 59 0.98 2 20 0.00039 0.081 15.5 0.8 1 23 65 87 65 87 0.98 3 20 0.0004 0.083 15.5 2.7 1 23 93 115 93 115 0.96 4 20 1e-05 0.0021 20.5 0.2 1 23 121 143 121 143 0.98 5 20 2.7e-05 0.0055 19.2 2.7 1 23 149 171 149 171 0.98 6 20 3.3e-06 0.00068 22.0 2.2 1 23 177 199 177 199 0.98 7 20 1.8e-07 3.8e-05 26.0 0.4 1 23 210 232 210 232 0.98 8 20 2.4e-06 0.00049 22.5 0.2 1 23 238 260 238 260 0.98 9 20 0.00017 0.036 16.6 0.1 3 23 268 288 267 288 0.97 10 20 2.1e-05 0.0044 19.5 1.1 1 21 294 314 294 315 0.95 11 20 0.00032 0.066 15.8 2.2 1 23 401 423 401 423 0.95 12 20 0.00093 0.19 14.3 1.3 1 23 429 451 429 451 0.98 13 20 0.031 6.4 9.5 0.4 2 23 458 479 457 479 0.95 14 20 0.00072 0.15 14.7 2.7 2 23 486 507 485 507 0.97 15 20 0.00038 0.079 15.5 1.8 1 23 513 535 513 535 0.96 16 20 0.006 1.2 11.8 0.3 3 23 546 565 545 565 0.98 17 20 6e-06 0.0012 21.2 0.6 1 23 570 592 570 592 0.98 18 20 0.00027 0.056 16.0 2.1 1 23 598 620 598 620 0.96 19 20 2.8e-05 0.0057 19.1 4.0 1 23 626 648 626 648 0.97 20 20 0.00038 0.079 15.5 3.4 1 23 654 676 654 677 0.95
Sequence Information
- Coding Sequence
- ATGTGCCTCTACATTCAACTCATCCTGCCAACTATGGGATCCCCAGCCAAATCTCACCAAAAGTGTGTCAGGAAAGTGAAGCGAAGATCACCCAAGAAAAGGCGTGATAGTGGCAAGTGTGAGTTCTGTGGTAAAGGATTTGTTCAAAGTAAGCTGGAGATACATAGGCGCACACATACGGGCGAACGCCCTTTCATGTGTAGTTCCTGCGGCATCACGTTTCTTAGCAACGGCAAGCTCAAATCACACATGAACACCCACAGCGAGGTGAGGCCTCATGCGTGCACAACGTGCGACCGTAGGTTCAAACGTACCAAGGAGTTGAGTGACCACGTGAAGATACACACAGGGGAAAAAGATTTCATCTGTAACATCTGCGGGGCAGCATATATACAGAAGTCAAACCTTGTCAATCACAAGAAGAGGCACTTTGGTCACTTCAGTTTCAAATGCCATGTTTGCGACAAGGGTTTTTATAGCAAGACAGAGTTGAAGGAGCATTCAAACATTCACTTGGGCGTGAAACCATTTGTCTGCGAGGTGTGTGGTAAGGCATACCCGTACAAACACAATCTAACCACTCACAAGCGCAAGCACGACCCTAAACACACGGTTTCACCTAACAAGCACCAGTGTGAGGTGTGCGGGAAGGTGTTTGCCCAACGCGGGTCCCTCACTCTCCACATGCGCGCTCACACAGGACAAGCCATCTTTGTGTGCAACATGTGCGGCAAGTCGCTGTCGAGTAAGGCGTCGCTCATTGTGCATGAACGCACACACACTGGAGAGAAGCCAAACATTTGTGGAACGTGTGGCAAGGCGTTTGCATCGGTAGAGTATCTGAAGATCCATGAGCGTAGACACACCGGAGAGAAACCTCATCGTTGTGATGAGTGCGGGAAATATTTCACTCAGCGCTCGTCGCTCAGCATTCACAAGAGATGGAAGAAAAAAACTAAGTCTGGTAACTTAACTCGAACGAACAAGAACACGTCTCTGAAGTTAAGCCGTAAGGTCAAGAAGTCGGTGAAGGCAACGCGCTTGCCTCGGCTTAGACATAATGATAAGGAAGTTAAGGGTAAAGTATCAAAAACGGACCAAGGAGGTGATCTAGGAACAGACCCTGGGGTCGACCTGTGGTATAGTATCTACGACATGTACAGGAAGATGGAATCAAGCGCTGCGCTTGCCAATGGCAAGTATCTCTGCAACATATGTGGTAAAATCTGTTCGAGCAAGACTAGTTTCAGGTATCACTTGGAGATTCACAGCGAGGTGCCCAAGTATAAATGTGACGTTTGTGACAAGCAGTTTCAAACATACCCTAGACTCTTCAATCACAGGTTAATTCATAGAAAGAGTAAGGATCAAGTTTGCGATGTGTGTGGTTACTGCACTTACTATAAGGCTGCTCTGGATATACACAAGATGCTGCATTCACAGAAGTTTAAACTTTACTGTGAGATTTGCAGCAAGGGTTTCAAGTCAAAATGCTATTACGACGACCACATGAACACGCACACTGGTAACAACCCGTATATTTGCGATATATGCGGGAAGGCGTTCCCTTGCAAGAGCAACTTGGCCAACCACAAGATTCACCACAAACCCGGCTATAAGCCTTACAGCCGCCTTTGCGAGATCTGCGGTATAAGCGTTCAGCGCTCGAGCTACGAGAGCCATCAGCGGCGTCACAACAACGAGATGTATGATTGCGACATTTGCGGCAAGAAGATAACAAAGAAGAACTCTCTGATCACGCATATGCGTATGCACATGAACGACAAACCCCACGCTTGCGAGTTTTGCGGAAAGATGTTCGGCTCGACACGTTATCTCCGCCTTCATCGCCGCGTTCACACCGGCGAGAAGCCTCACATGTGCCAGTTCTGTCAGAAGAGTTTCTCTCAGCGGTCGTCTCTCATCATTCACACAAGGAACCATACCGGCGAGAAGCCCTATACTTGCGACATTTGCAATCATGGGTTTGTTAGCAGAAATCAGTTGACCAATCACAACCGAGCTCATCATTCTGAGCAGTCTCAGAAGTACAGGAAGTTTCTTGTTAACGACGAGAGAACTCTTACAGATAACTCTTTAGTTTAA
- Protein Sequence
- MCLYIQLILPTMGSPAKSHQKCVRKVKRRSPKKRRDSGKCEFCGKGFVQSKLEIHRRTHTGERPFMCSSCGITFLSNGKLKSHMNTHSEVRPHACTTCDRRFKRTKELSDHVKIHTGEKDFICNICGAAYIQKSNLVNHKKRHFGHFSFKCHVCDKGFYSKTELKEHSNIHLGVKPFVCEVCGKAYPYKHNLTTHKRKHDPKHTVSPNKHQCEVCGKVFAQRGSLTLHMRAHTGQAIFVCNMCGKSLSSKASLIVHERTHTGEKPNICGTCGKAFASVEYLKIHERRHTGEKPHRCDECGKYFTQRSSLSIHKRWKKKTKSGNLTRTNKNTSLKLSRKVKKSVKATRLPRLRHNDKEVKGKVSKTDQGGDLGTDPGVDLWYSIYDMYRKMESSAALANGKYLCNICGKICSSKTSFRYHLEIHSEVPKYKCDVCDKQFQTYPRLFNHRLIHRKSKDQVCDVCGYCTYYKAALDIHKMLHSQKFKLYCEICSKGFKSKCYYDDHMNTHTGNNPYICDICGKAFPCKSNLANHKIHHKPGYKPYSRLCEICGISVQRSSYESHQRRHNNEMYDCDICGKKITKKNSLITHMRMHMNDKPHACEFCGKMFGSTRYLRLHRRVHTGEKPHMCQFCQKSFSQRSSLIIHTRNHTGEKPYTCDICNHGFVSRNQLTNHNRAHHSEQSQKYRKFLVNDERTLTDNSLV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449808;
- 90% Identity
- iTF_01449808;
- 80% Identity
- -