Tpod030425.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000008.1:75294477-75310386[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-11 6.3e-09 37.2 0.1 1 43 15 58 15 59 0.94
Sequence Information
- Coding Sequence
- ATGCCACGAAAATATATTCGTATAAGTAATCGCCAAAATTGGTCCGAGGAGAATATGGCGAAAGCAATTTATGAAGTTATTCAAGGAAATATGAGCTATAAGAAGGCATCTTTTGCTTATGATTTACCTCAGTCGACTCTTGAAGATCGTGTAAAAAAAGCCAAAATTGGAGCTTCAGTAGAAGTAGCAGCTAGAAAAGggatgggaAACTTCAAATGTGTGTTCACCGAGAACCAAGAAAGGGAACTTGTTCAGCATATAAAGTTCATGGAGATCCGCTTGTTTGGTCTCACAACGAAAGATGTAAGGCGTCTTGCTTACGAGTTAGCTGAGAAAAATGGACTCAAACATAATTTCAACCTCGAGGAGAAACTTGCAGGACCTGATTGGCTAAGTTGTTTTATGAAACGTCATCCTGATCTGTCACTCAGAAAACCGGAAGCAACTTCAGCTGCACGGGCAATGGGGTTTAATAAAACCgctgtttcaaaattttatgaaattctGGCCAGCTGTTTTGAAACCTACAAATTCCAACCAGGACGTATCTATAACGTTGATGAAACGGGACTAACATCTGTGCCTAAAACACAGTCTAAAGTTTTGGCCCAGAAAGGCAGGAGGCAGGTTGGTGCTCTGACGTCAGCAGAGCGAGGACAATTGGTAACGGCGGAGCTTTGTTTCTCGGCAGCCGGACATTATATTCCACCATTATTGATATTCCCAAGAATAAGAATGAAGGAAGAACTTATCGAAGGTGCACCACCAGGGACAATTGCTATATGCCACCCTAGTGGCTGGATGCAagcagaaatatttttagaatggaTGCAGCACTTTATCAGTAACGCAAAACCTTCGAAAGACGAACCAGTTCTTCTGTTGCTTGATGGACATGCAACACACGTCAAAAACTTGGCAGTTATTGACATTGCTCGTGACAATGGGATCATAATACTTTGCTTTCCGCCACATTGTACCCACAAGCTTCAGCCGTTAGACGTAAGCTTCATGGCTCCTCTAAGCACTTTTTATGGACAGGAAGTGAAGACATGGCTCCTTAATCATCCAGGGAGAGTGGTAACGCAATATCAGATCGCCAAATTGTTTGGGTTGGCTTACATTCGAGCAGCAACCATGCAAAATGCGATTTCCGGGTTTCAGAAGACCGGGATTTATCCACTAAATCCAAATACGTTCGGAGAAGAAGCATATGCTCCAGCAGACACAACAGAAAGAACTGCTGAAAAAGAGAGTGTAAATCCTGAAACAGATTGTGAGTCTCAACCTGGACCACCTTGTGAGCCTCAACCTGGACCTTCTTGTGAGCCTCAGCCTGGACAATCTTGTGAGCCTCAACCTGGACAATCAGGTCTTGCAGTAACACCAAAGAAAGTTTCGTATAACTTTAGCGTTTCACCTCAAGATGTAATTCCAATTCCACACTGTGAAAGATCTTTTTCAAACAGAAGAAGAGGCAAAACAGCCATCATTACAAGCTCCCCATACAGGAATGAACTGAGGGAAATGCAGAGAGGCCCTgcaaataaacaagtaaaaagaaaattgttgacAAAACCCCGCAATCTGAAGCAAGAACAAAGTCAACATTCTAGTTCTTCCGATGAGGATAAAAATGAAACACCTTGTCTTCTCTGTAAAGAACCTTATTCTTCTACCAAAAAGACAGATGAATGGGTTAGGTGTCTAGAATGTCAAAAATGGGCGCATGAAAGCTGTACCGGATGGGATAAAAATGAGCTGGACGAATTTGTGTCAACCTTCCAATCACAACAGCCCTATGCCAGTTTTCGATACGAGCGCCGGCCGGTGGCTAAACTGGATCTGGGGCCCGTGGAGTGCAATTCCTCAAAGCTACTTGATGGTACCATGAAGATACCCCCAAGTCCACCTTCACTGCTGCCTAATTGCAACATAATAAAGCTACAATATATCATCGAGGTGAAGGCGACGGTAGCCGGGCCCCACAAGAACATGTATGttaacctccccatcactgtaGGCACTGTGCCCCTCATATTCCAAGAGAACTGGGAACCCTCCCCTTCCGCTCCTCTACTGGAGCCCACTGCGCCCGCCTACCCAGAACTCCCTCCTCCCTCGTACGACGAATGCTATTTTGGCTCGTCAAACATCAAGGACAAAGGGGACACCCAGTACACATTTGGTTCCACACAGTATGTACCACGCTATCCCACCTACAATATGTAG
- Protein Sequence
- MPRKYIRISNRQNWSEENMAKAIYEVIQGNMSYKKASFAYDLPQSTLEDRVKKAKIGASVEVAARKGMGNFKCVFTENQERELVQHIKFMEIRLFGLTTKDVRRLAYELAEKNGLKHNFNLEEKLAGPDWLSCFMKRHPDLSLRKPEATSAARAMGFNKTAVSKFYEILASCFETYKFQPGRIYNVDETGLTSVPKTQSKVLAQKGRRQVGALTSAERGQLVTAELCFSAAGHYIPPLLIFPRIRMKEELIEGAPPGTIAICHPSGWMQAEIFLEWMQHFISNAKPSKDEPVLLLLDGHATHVKNLAVIDIARDNGIIILCFPPHCTHKLQPLDVSFMAPLSTFYGQEVKTWLLNHPGRVVTQYQIAKLFGLAYIRAATMQNAISGFQKTGIYPLNPNTFGEEAYAPADTTERTAEKESVNPETDCESQPGPPCEPQPGPSCEPQPGQSCEPQPGQSGLAVTPKKVSYNFSVSPQDVIPIPHCERSFSNRRRGKTAIITSSPYRNELREMQRGPANKQVKRKLLTKPRNLKQEQSQHSSSSDEDKNETPCLLCKEPYSSTKKTDEWVRCLECQKWAHESCTGWDKNELDEFVSTFQSQQPYASFRYERRPVAKLDLGPVECNSSKLLDGTMKIPPSPPSLLPNCNIIKLQYIIEVKATVAGPHKNMYVNLPITVGTVPLIFQENWEPSPSAPLLEPTAPAYPELPPPSYDECYFGSSNIKDKGDTQYTFGSTQYVPRYPTYNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448381;
- 90% Identity
- iTF_01450403; iTF_01450407; iTF_01450408; iTF_01449417; iTF_01450409; iTF_01449418; iTF_01449419; iTF_01450411;
- 80% Identity
- -