Tmon019643.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010000714.1:303495-309154[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-12 2.3e-09 38.9 0.0 1 43 15 58 15 59 0.94
Sequence Information
- Coding Sequence
- ATGCCACGAAAATATATTCGTATAAGTAATCGCCAAAATTGGTCCGAGGAGAATATGGCGAAAGCAATTGATGAAGTTATTCAAGGAAATATGAGCTATAAGAAGGCATCTTTTACTTATGATTTACCTCAGTCGACTCTTGAAGATCGTGTAAAAAAAGCCAAAATTGGAGCTTCAATAAAAGTGGCAGCTAGAAAAGggaTGGGAAACTTCAAATGTGTGTTCACCGAGAACCAAGAAAGGGAACTTGTACAGCATATAAAGTTAATGGAGATCCGCTTGTTTGGTCTCACAACGAAAGATGTAAGGCGTCTTGCTTACGAGTTAGCTGAGAAAAACGGACTCAAACATAATTTCAACCTCAAGGAGAAACTTGCAGGACCTGATTGGCTAAGTTGTTTTATGAAACGTCATCCTGATCTGTCACTCAGAAAACCGGAAGCAACTTCAGCTGCACGGGCAATGGGGTTTAATAAAACCGctgtttcaaaattttatgaaattctGGCCAGCTGTTTTGAAACCTACAAATTCCAACCAGGACGTATCTATAACGTTGATGAAACGGGACTAACATCTGTGCCTAAAACACAGTCTAAAGTTTTGGCCCAGAAAGGCAGGAGGCAGGTAGGTGCTCTGACGTCAGCAGAGCGAGGACAATTGGTAACGGCGGAGCTTTGTTTCTCGGCAGCCGGACATTATGTTCCACCATTATTGATATTCCCAAGAATAAGAATGAAGGAAGAACTTATCGAAGGTGCACCACCAGGGACAATTGCTATATGCCACCCTAGTGGCTGGATGCAagcagaaatatttttagaatggaTGCAGCACTTTATCAGTAACGCTAAACCTTCGAAAGAAGAACCAGTTCTTCTGTTGCTTGATGGACATGCAACACACGTCAAAAACTTGGCAGTTATTGACATTGCTCGTGACAATGGGATCATAATACTTTGCTTTCCGCCACATTGTACCCACAAGCTTCAGCCGTTAGACGTAAGCTTCATGGCTCCTCTAAGCACTTTTTATGGACAGGAAGTGAAGACATGGCTCCTTAACCATCCAGGGAGAGTAGTAACGCAATATCAGATCGCCAAATTGTTTGGGTTGGCTTACATACGAGCAGCAACCATGCAAAATGCGATTTCCGGGTTTCAGAAGACCGGGATTTATCCACTAAATCCAAATACGTTCGGAGAAGAAGCATATGCTCCAGCAGACACAACAGAGAGAACTGCTGAAAAAGAGAGTGTAAATCCTAAAACAGATTGTGAGCCTCAACCTGGACCTTCTTGTGAGCCTCAGCCTGGACAATCAGGTCTTGCAGTAACACCAAAGAAAGTTTCGTATAACTTTAGCGTTTCACCTCAAGATGTAATTCCAATTCCACATTGTGAAAGATCTATTTCAAACAGAAGAAGAGGCAAAACAGCCATCATTACAAGCTCCCCATACAGGAATGAACTGAGGGAAATGCAGAGAGGCCCTGcaaataaacaagtaaaaagaaaattgttggcAAAATCCCGCAATCTGAAGCAAGAACAAAGTCGACATTCTAGTTCTTCCGATGAGGATAAAAATGAAACACCATGTCTTCTCTGTAAAGAACCTTATTCTACTACCAACAAGACAGATGAATGGGTTAGGTgtctaaaatgtcaaaaatgggCGCATGAAAGCTCATTTGCCAAGATTGACCTGAACAGTGTCGTGTCTTGGAGTGTTGCCTGCGTAAGCAGAAGTATAGCTGTCAGCTACCGCCTCTCCTATCGTAGTCAGAGTAAAGCTGTCAGCTACCACCTCTCCTATCGTAGTCAGAGTAtagctgtcagctaccaccTCTCCTATCGTAGTCAGAGTATAGCTATCAGCTACCACCTCTCCTATCGTAGTCAGAGTATAGCTATCAGCTACCACCTCTCCGGTCGTAGATGA
- Protein Sequence
- MPRKYIRISNRQNWSEENMAKAIDEVIQGNMSYKKASFTYDLPQSTLEDRVKKAKIGASIKVAARKGMGNFKCVFTENQERELVQHIKLMEIRLFGLTTKDVRRLAYELAEKNGLKHNFNLKEKLAGPDWLSCFMKRHPDLSLRKPEATSAARAMGFNKTAVSKFYEILASCFETYKFQPGRIYNVDETGLTSVPKTQSKVLAQKGRRQVGALTSAERGQLVTAELCFSAAGHYVPPLLIFPRIRMKEELIEGAPPGTIAICHPSGWMQAEIFLEWMQHFISNAKPSKEEPVLLLLDGHATHVKNLAVIDIARDNGIIILCFPPHCTHKLQPLDVSFMAPLSTFYGQEVKTWLLNHPGRVVTQYQIAKLFGLAYIRAATMQNAISGFQKTGIYPLNPNTFGEEAYAPADTTERTAEKESVNPKTDCEPQPGPSCEPQPGQSGLAVTPKKVSYNFSVSPQDVIPIPHCERSISNRRRGKTAIITSSPYRNELREMQRGPANKQVKRKLLAKSRNLKQEQSRHSSSSDEDKNETPCLLCKEPYSTTNKTDEWVRCLKCQKWAHESSFAKIDLNSVVSWSVACVSRSIAVSYRLSYRSQSKAVSYHLSYRSQSIAVSYHLSYRSQSIAISYHLSYRSQSIAISYHLSGRR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449409; iTF_01450401; iTF_01450402; iTF_01450404; iTF_01450405; iTF_01449414; iTF_01450406; iTF_01450407; iTF_01450408; iTF_01449417; iTF_01450409; iTF_01449418; iTF_01450410; iTF_01449419; iTF_01450411; iTF_01449422; iTF_01449405; iTF_01447422; iTF_01449406; iTF_01450398;
- 90% Identity
- iTF_01449409; iTF_01450401; iTF_01450402; iTF_01450404; iTF_01450405; iTF_01449414; iTF_01450406; iTF_01450410; iTF_01449405; iTF_01447422; iTF_01449406; iTF_01450398;
- 80% Identity
- -