Tpod017690.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000005.1:2465577-2469435[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.1e-10 1.3e-07 33.0 0.0 1 39 175 212 175 215 0.94 2 4 1.5e-11 4.9e-09 37.6 0.0 1 34 226 259 226 267 0.92 3 4 2e-15 6.5e-13 50.0 0.0 1 45 281 326 281 326 0.95 4 4 1.3e-15 4.3e-13 50.5 0.1 1 43 333 376 333 378 0.95
Sequence Information
- Coding Sequence
- ATGGAGGGACCTATAATCACAAGTTATGCAAAGAAGAAGGTTGTGTTAAACAGGCTCAGGGCAGAGACAAATGTGTTAAACATGGAGGGAGAAATAATCACAGGACATGCAAAGAGGAAGGTTGTGTTAAACAGATTCAGAGAGGAGGTAAATGTGCTAAACATGGAGGGAGCCAGTACTATAAGATGTGTAAAGAAGAAGGGTGCGTTAAACAGGCAAAGAGAAGAGGTAGTTGTTATAAACATGGAGGAACATATTATCATAAGACATGCAAAGAAGAAGGGTGTGTTAAACAGGCTCGAGGAGGAGATAAATGTGTTAAACATGGAGGGATCCAGTATCATAAGACATGTAAAGAAGAAGGGTGCATTAAACAGGCTAAAAAAGGAGGTAGTTGTGCTAAACATGGAGGAAGCCAGTAGTAAATGTTTGCAGGGATACCAAATGGTGCGCAATACCCCTCCGTTATCAGATGTGATTAGCGACGCAGGCAGATCTGGAACTATGGGTCCCAAGTTGTGGACCCAAGAGGATATGGAACTCGCCTTAGATGCACTGAGAAATAACATGAGTCTCGCTAAAGCATCTGCCACCTATCACATTCCTTCCCCCACTTTGTGGAAACGAGCTCGACGCATGGGTGTTGACATCCCCAAATTGAAGATCAAGTCTTGGACTGAGGACAATCTCAACAGCGCATTGGGGGCCTTAAGATCTGGCGCCATGTCCGCTAACAAGGCTAGCAAAGCTTATGGTATACCCAGCAGTACTCTGTTTAAAAATGCACACCTTAAAGGAATACGTTTGACCACTCCATTTAATGCTGCACCTACCACTTGGACACAAGATGACCTTGAACAAGCCCTAGTAGCTATCAGTTCAGGTCAAACTTCTGTTCAACACGCTTCTACAGAATATGGCATTCCTAGAGGGACATTATATGGCCGTTGCAAGCGAGACGGTATTAAACTTTCTCGGAATAACGTTGCACTCTGGTCAGAAGAATCAATGGCCGAAGCATTAGAAGCTGTGAGAGTTGGACAGATGAGCATCAAAGACGCAGCAAGTCACTACAAGCTTCCGTATTCTTCCTTATATGGTAGActtaaaaggaacaaataccAGGTGGAATTGGCCCCGTCATCTGGATGA
- Protein Sequence
- MEGPIITSYAKKKVVLNRLRAETNVLNMEGEIITGHAKRKVVLNRFREEVNVLNMEGASTIRCVKKKGALNRQREEVVVINMEEHIIIRHAKKKGVLNRLEEEINVLNMEGSSIIRHVKKKGALNRLKKEVVVLNMEEASSKCLQGYQMVRNTPPLSDVISDAGRSGTMGPKLWTQEDMELALDALRNNMSLAKASATYHIPSPTLWKRARRMGVDIPKLKIKSWTEDNLNSALGALRSGAMSANKASKAYGIPSSTLFKNAHLKGIRLTTPFNAAPTTWTQDDLEQALVAISSGQTSVQHASTEYGIPRGTLYGRCKRDGIKLSRNNVALWSEESMAEALEAVRVGQMSIKDAASHYKLPYSSLYGRLKRNKYQVELAPSSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01447411;
- 90% Identity
- -
- 80% Identity
- -