Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 4.1e-10 2.9e-07 32.0 0.0 1 39 121 158 121 161 0.94

2 4 2.4e-14 1.7e-11 45.6 0.1 1 34 172 205 172 213 0.92

3 4 3e-15 2.1e-12 48.5 0.0 1 41 227 268 227 272 0.93

4 4 8.9e-16 6.3e-13 50.2 0.1 1 44 279 323 279 324 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	4.1e-10	2.9e-07	32.0	0.0	1	39	121	158	121	161	0.94
2	4	2.4e-14	1.7e-11	45.6	0.1	1	34	172	205	172	213	0.92
3	4	3e-15	2.1e-12	48.5	0.0	1	41	227	268	227	272	0.93
4	4	8.9e-16	6.3e-13	50.2	0.1	1	44	279	323	279	324	0.96

Coding Sequence: aTGGAGGAACATCGTATAGTGAGTCATGTAAAGAAGAAGGGTGTTCTAATTGGGCTAACAGAGGAGGTAAATGTGCTGAACATGAAAGGACCCAGTATCGGGGGACATGCAAACAAGAAGGGTGTCCTAAAGTTGCTCAGAGAGGAGGTTATTGTGTTAAACATGGAGGGATCCAGTATCGCAAGACATGCGAAGAAGAAGGTTGTGTTAAACAGGCTCGAGGAGGATATAACAAATGTGTTAAACATGGAGGGACCAATAATCATAGGACATGCAAAGAAGAAGGTGCGCAATACCCCTCCGTTATCAGATGTGATTAGCGACGCAGGCAGATCTGGCACTATGGGTCCCAAGTTGTGGACCCAAGAGGATATGGAACTCGCCTTGGATGCGCTGAGAAATAACATGAGTCTCACTAAAGCATCTGCCACCTATCACATTCCTTCCCCCACTTTGTGGAAACGAGCTCGACGCATGGGTGTTGACATCCCCAAATTGAAGATCAAGTCTTGGACTGAGGACAATCTCAACAGCGCATTGGAGGCCATAAGATCTGGCGCCATGTCCGCTAACAAGGCTAGCAAAGCTTATGGTATACCCAGCAGTACTCTGTTTAAAAATGCACACCTTAAAGGAATACGTTTGACCACTCCATTTAATGCTGCACCTACCACTTGGACACAAGATGACCTTGAACAAGCCCTAGTAGCTATCAGTTCAGGACAAACTTCTGTTCAACACGCTTCTACAGAATATGGCATACCTAGAGGGACATTATATGGACGTTGCAAGCGAGACGGTATTAAACTTTGTCGGAGTAACGTTGCACTCTGGTCAGAAGAGTCAATGGCCGAAGCATTAGAAGCTGTGAGAGTTGGACAGATGAGCATCAAAGACGCATCAAGTCACTACAAGCTTCCGTATTCTTCCTTATATGGTAGACTTAAAAGGACCAAATACCAGGTGGAATTGGCCCCGTCATCTGGATGA
Protein Sequence: MEEHRIVSHVKKKGVLIGLTEEVNVLNMKGPSIGGHANKKGVLKLLREEVIVLNMEGSSIARHAKKKVVLNRLEEDITNVLNMEGPIIIGHAKKKVRNTPPLSDVISDAGRSGTMGPKLWTQEDMELALDALRNNMSLTKASATYHIPSPTLWKRARRMGVDIPKLKIKSWTEDNLNSALEAIRSGAMSANKASKAYGIPSSTLFKNAHLKGIRLTTPFNAAPTTWTQDDLEQALVAISSGQTSVQHASTEYGIPRGTLYGRCKRDGIKLCRSNVALWSEESMAEALEAVRVGQMSIKDASSHYKLPYSSLYGRLKRTKYQVELAPSSG*

Sequence clustering based on sequence similarity using MMseqs2