Tpod033059.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000009.1:31714961-31716766[-]
Transcription Factor Domain
- TF Family
- CSL
- Domain
- BTD domain
- PFAM
- PF09270
- TF Group
- Beta-Scaffold Factors
- Description
- Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR) [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00011 7.3 8.5 0.0 31 64 11 44 6 51 0.90 2 9 0.0097 6.3e+02 2.3 0.0 30 66 74 110 68 116 0.80 3 9 8.1e-05 5.3 9.0 0.0 31 63 123 155 118 158 0.90 4 9 0.0004 26 6.7 0.0 31 64 155 188 153 193 0.89 5 9 0.0054 3.5e+02 3.1 0.0 31 64 203 236 197 243 0.84 6 9 8.3e-05 5.4 8.9 0.0 29 64 281 316 250 321 0.87 7 9 0.0057 3.7e+02 3.0 0.0 31 64 331 364 326 370 0.84 8 9 0.0026 1.7e+02 4.1 0.0 29 63 345 379 338 382 0.83 9 9 5e-05 3.3 9.6 0.0 29 67 377 415 371 419 0.88
Sequence Information
- Coding Sequence
- ATGTACCCTACTATAGCTATTAGACGTGTTCAGACCAGCAGTGGATATATGTACCCTACTATAGCTATTAGACATGTTCAGACCAGCAGTGGATATATGTACCCTACTATAGCTATTAGACGTGTTCAGACCAGCAGCGGACATATGTACCCTACTATAGCTAGTAGACGTGTTCAGACCAGCAGTGGACAGATGTACCCTACTATAGCTAGTAGACGTGTTCAGACCAGCAGTGGACATATGCACCCTACTATAGCTATTAGACGTGTTCAGACCAGCAGTGGACATATGTACCCTACTATAGCTAGTAGACGTGTTCAGACCAGCAGCGCTCAGATGTACCCTACTATAGCTATTAGACGTGTTAAGACCAGCAGTGGATATATATACCCTACTATAGCTATTAGACATGTTCAGACCAGCAGTGGATATATGTACCCTACTATAGCTATTAGACATGTTCAGACCAGCAGTAGATATATGTATCCTACTATAACTATTAGACGTGTTCAGACCAGCAGTGGATATATGTACCCTACTATAGCTATTAGACGTGTTCAGACCAGCAGTGGACATATGTATCCTATTATAGCTAGTGGACATATTCAGACCAGCAGTAGATATATGTACCCTACTATAGCTAGTAGACGTGTTCAGACCAGCAGTGGATATATGTACCCTACTATAGCTATTAGACGTGTTCAGACCAGCAGTGGACATATGTATCCTATTATAGCTAGTGGACATATTCAGACCAGCAGTAGATATATGTACCCTACTATAGCTAGTAGACGTGTTCAGACCAGCAGTGGATATATGTACCCTACTATAGCTAGTAGACGTGTTCAGACCAGCAGTGGATATATGTACCCTACTATAGCTATTAGACGTGTTCAGACCAGCAGTGGATATATGTACCCTACTATAGCTATTAGACGTGTTCAGACCAGCAGTGGACATATGTATCCTATTATAGCTAGTGGACATATTCAGACCAGCAGTAGATATATGTACCCTACTATAGCTAGTAGACGTGTTCAGACCAGCAGTGGATATATGTACCCTACTATAGCTATTAGACGTGTTCAGACCAGCAGTGGATATATGTACCCTACTATAGCTAGTAGACGTGTTCAGACCAGCAGTGGATATATGTACCCTACTATAGCTATTAGACGTGTTCAGACCAGCAGTGGATATATGTACCCTACTATAGCTATTAGACGTGTTCAGACCAGCAGCGCTCAGATGTACCCTATTATAGCTAGTGGACATGTTCAGAGCAGTATTGGACAGGAGAGCAACAGTGTGGACAGTGAAGAGCTGTACCTCTTGTGGCAGACTCTCAACTGCGAACTTATTGATTGGGATCGTCACAACCCCCACCATCGTACACAACATAAACCCCACACAGCCATGGGTACAACCACCATAGCCGCAGCCACCATAGCCACTGACACCGTCACTACCACCACCACAGTCACACACTCTATCACCACCCCAACCATTGCCATCAACACCACCCCCATCGCCACAAACATCACACCATAA
- Protein Sequence
- MYPTIAIRRVQTSSGYMYPTIAIRHVQTSSGYMYPTIAIRRVQTSSGHMYPTIASRRVQTSSGQMYPTIASRRVQTSSGHMHPTIAIRRVQTSSGHMYPTIASRRVQTSSAQMYPTIAIRRVKTSSGYIYPTIAIRHVQTSSGYMYPTIAIRHVQTSSRYMYPTITIRRVQTSSGYMYPTIAIRRVQTSSGHMYPIIASGHIQTSSRYMYPTIASRRVQTSSGYMYPTIAIRRVQTSSGHMYPIIASGHIQTSSRYMYPTIASRRVQTSSGYMYPTIASRRVQTSSGYMYPTIAIRRVQTSSGYMYPTIAIRRVQTSSGHMYPIIASGHIQTSSRYMYPTIASRRVQTSSGYMYPTIAIRRVQTSSGYMYPTIASRRVQTSSGYMYPTIAIRRVQTSSGYMYPTIAIRRVQTSSAQMYPIIASGHVQSSIGQESNSVDSEELYLLWQTLNCELIDWDRHNPHHRTQHKPHTAMGTTTIAAATIATDTVTTTTTVTHSITTPTIAINTTPIATNITP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -