Tmon041684.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010002698.1:985-7028[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.1 21 7.9 2.0 1 21 201 221 201 223 0.94 2 12 0.014 2.8 10.6 1.7 1 21 229 249 229 250 0.93 3 12 1.1e-07 2.3e-05 26.7 2.5 1 23 278 300 278 300 0.98 4 12 0.0066 1.4 11.6 2.2 2 23 309 331 308 331 0.96 5 12 0.02 4.2 10.1 0.9 2 23 338 359 337 359 0.96 6 12 3.4e-05 0.0069 18.8 4.8 1 23 365 387 365 387 0.94 7 12 1.2e-05 0.0024 20.3 2.2 1 23 407 429 407 429 0.97 8 12 1.6e-05 0.0034 19.8 1.1 1 23 435 458 435 458 0.98 9 12 3.3e-05 0.0067 18.9 0.8 1 23 464 486 464 486 0.98 10 12 0.00021 0.044 16.3 0.9 1 23 492 514 492 514 0.95 11 12 2.7e-06 0.00056 22.3 6.4 1 23 520 542 520 542 0.98 12 12 0.00045 0.092 15.3 0.6 1 23 548 570 548 570 0.95
Sequence Information
- Coding Sequence
- ATGTGTTGCCGGGTCTCCCTCTTTATACCCCTCGACTCTCACCATCGGCTGGTCCTTGTCATCGCTGTCCCACGAGATGGCATGCACCCACCGCTCTGGCAAAGCCCACCCACAGGACCGGTGCCTAGCCACCAATGTCACCAGGAGACTGCACTTCGAATGATGCAACCCGTAACACCCGAAGACGAAGTTGGGGATGACAATCTCAGTTGCTGGTTCATGACAAAAGtggcaaaGTCTCAGGACGTGAGCGTTAGCACGGGCGGCCAAGATTCAACCAGGCAGGTTTACTCAGTTTGGATTCAAACTGATGATGACACTGAGGAGTTTTTGTGTGACATAGCTGATGGAATTGATGGCGAAGGTGTAGTGTTTGTCAGCTCTGCAGTTGGCAAGGACAAATTATTAGAGGGCACACAGTTGCCTGTCGAGAACTCACATGACTGGGACAAGATTAGGGATGAATTGAATAATGGAACTATGATTATAGATGAAGTTGATGATCAGACTATATTTTATGTGACCCCTCAGACTATCAAACTAATGGGGTCCAGGAGGACTGTAAAGTGGCCGCCAAGAAGCTGTGTCGGGGAACAGTTGTATGAATGTCAGTTCTGCCTGAAGAGTTTTCGTGACGGGGGAGTGCTGCTCACTCACCTCAGATGTCACACTGGGTTTACACCTTTCTTTTGCAAGTTCTGTGGAGGGAAATTCAAACTCTCGGCTTCTTTGAAACATCACCTAGACACATGTCTCGCAGCCGCTTGTGCAGAAGCAACAGGTGATGTTAAAAAAGAGCTTCACCCACTGGCTAAAAATGAACAAGGTTTCTTTGAGTGTAACTACTGCGGTAAGAAGTTTAAGTTCAAAGCTAATTTGAAGGAGCATATTAGATATCACACTGGAAGGCCCAGGTGCAAGCAGCGGTGTGACATTTGTACCAAAAAGTTTCTGCGAAGACACGAACTCTTGGTCCACCTCACCACTGACCATTTAGATATCACTTATATGACATGTGACACATGTAACAAAATCTGCATAAGTGAGCGAGATTTAGCAGACCATAAGATCAGCCATTCTAATGAGCGGCCATTCATCTGTTTGTTCTGTGGGAGGAAGTTCAAGCGCAAGTCCCACTTAACGAGACACGAAACAAACCACAGGTACCAACAGCAAGGTCTTCGCCCACCAACCCCGCGCCGGAAAGAGGGCTTAGAGTTTAAGTGCGAGCTCTGTGGAAAGAACTACTCAACCAAGCGCCAGCTGCAAAATCATGGTTTCACACATACAGGCGAGAGGAACTACGAGTGCCAGCATTGCGGTAAACGCCTCGGCCAGTTTGGTACTCTTAAGAGACATATCCGTGTGGTGCACGAGGGCATCAAGGACTTTGTTTGTGAACTCTGCCAGCGCTCTTTCACTGCCAAAGTATCACTCACCAATCATAAACGCATTCACACAGGGGAAAAGCCCTTTTTGTGTGAGTTGTGTGGGAAGGGGTTTCGAACGCCCCAGCAGATGCACCTCCATGAGCGCATACACACCAATGAGCGCCCTCATTCCTGTCCTTATTGTGAGAAGTGCTTTCGGCGGCGGCCACACCTGCTGGTACACATCCGCACGCATACTGGAGAAAAACCTTATGAATGTGACGTGTGCAGACGCGGGTTTGCACAGAAGAATGACATGAAGAAGCACCGGGTGCTACATGACCGATATAGACGATATCGTTGA
- Protein Sequence
- MCCRVSLFIPLDSHHRLVLVIAVPRDGMHPPLWQSPPTGPVPSHQCHQETALRMMQPVTPEDEVGDDNLSCWFMTKVAKSQDVSVSTGGQDSTRQVYSVWIQTDDDTEEFLCDIADGIDGEGVVFVSSAVGKDKLLEGTQLPVENSHDWDKIRDELNNGTMIIDEVDDQTIFYVTPQTIKLMGSRRTVKWPPRSCVGEQLYECQFCLKSFRDGGVLLTHLRCHTGFTPFFCKFCGGKFKLSASLKHHLDTCLAAACAEATGDVKKELHPLAKNEQGFFECNYCGKKFKFKANLKEHIRYHTGRPRCKQRCDICTKKFLRRHELLVHLTTDHLDITYMTCDTCNKICISERDLADHKISHSNERPFICLFCGRKFKRKSHLTRHETNHRYQQQGLRPPTPRRKEGLEFKCELCGKNYSTKRQLQNHGFTHTGERNYECQHCGKRLGQFGTLKRHIRVVHEGIKDFVCELCQRSFTAKVSLTNHKRIHTGEKPFLCELCGKGFRTPQQMHLHERIHTNERPHSCPYCEKCFRRRPHLLVHIRTHTGEKPYECDVCRRGFAQKNDMKKHRVLHDRYRRYR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445883;
- 90% Identity
- iTF_01446860; iTF_01445042; iTF_01450842; iTF_01445883; iTF_01447804; iTF_01449853;
- 80% Identity
- -