Tbar040336.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010005058.1:22976-24535[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.089 20 8.0 2.0 1 21 143 163 143 165 0.94 2 12 0.012 2.6 10.8 1.7 1 21 171 191 171 192 0.93 3 12 9.4e-08 2.1e-05 26.9 2.5 1 23 220 242 220 242 0.98 4 12 0.0057 1.3 11.8 2.2 2 23 251 273 250 273 0.96 5 12 0.018 4 10.3 0.9 2 23 280 301 279 301 0.96 6 12 2.9e-05 0.0065 19.0 4.8 1 23 307 329 307 329 0.94 7 12 9.9e-06 0.0022 20.5 2.2 1 23 349 371 349 371 0.97 8 12 1.4e-05 0.0032 20.0 1.1 1 23 377 400 377 400 0.98 9 12 2.8e-05 0.0063 19.1 0.8 1 23 406 428 406 428 0.98 10 12 0.00018 0.041 16.5 0.9 1 23 434 456 434 456 0.95 11 12 2.3e-06 0.00052 22.5 6.4 1 23 462 484 462 484 0.98 12 12 0.00038 0.086 15.5 0.6 1 23 490 512 490 512 0.95
Sequence Information
- Coding Sequence
- atgtgttgtgtCAATGAAGTCCTGAGCCGCCCGTTCTTACGCTGCACACTTTTGTGTTGCAGGTCGCAGGACGTGAGCGTTAGCACGGGCGGCCAAGATTCAACCAGGCAGGTTTACTCGGTTTGGATTCAAACCGACGATGACACTGAGGAGTTTTTGTGTGACATAGCTGAGGGGATTGATGGCGAAGGTGTAGTGTTTGTCAGCTCTGCAGCTGGCAAGGACAACTTATTAGAGGGCACACAGTTGCCTGTCGAGAACTCACATGACTGGGACAAGATTAGGGGTGAATTGGATAATGGAACTATGATTATAGATGAAGTTAGtgatcaaactatattttatgtgaCCCCTCAGACTATCAAACTAATGGGGTCCAGGAGGACTGTAAAGTGGCCGCCAAGAAGTTGTATTGGGGAACAGTTGTACGAGTGTCAGTTCTGTCTGAAGAGTTTCCGTGACGGAGGTGTGCTGCTCACCCACCTCAGATGTCACACTGGGTTTACACCCTTCTTTTGCAAGTTCTGTGGAGGGAAATTTAAACTCTCTGCTTCTTTGAAACATCACCTGGACACCTGTATCGCAGCCGCTTGTGCAGAAGCAACAGGTGATGTTAAAAAAGAGCTTCACCCACTAGCTAAAAATGAACAAGGTTTCTTTGAGTGTAATTACTGCGGTAAGAAATTTAAGTTCAAAGCTAATTTGAAGGAGCATATTAGATATCACACTGGCAGGCCCAGGTGCAAGCAACGGTGTGACATTTGCACCAAAAAGTTTCTGCGAAGACATGAACTCTTGGTCCACCTTACCACAGACCATTTAGATATCACCTATATGACATGTGACACATGTAACAAAATATGCATAAGTGAGCGAGATTTAGCAGACCATAAGATCAGTCATTCTAATGAACGGCCATTCATCTGTTTGTTCTGTGGGAGGAAGTTCAAGCGCAAGTCCCACTTAACGAGACACGAAACAAACCACAGGTACCAACAACAAGGTCTTCGCCCACCACCCCCGCGCCAGAAAGAGGGTTTAGAGTTCAAGTGCGAGCTCTGTGGGAAGAACTACTCGACCAAGCGCCAGCTGCAAAATCATGGTTTCACACATACAGGCGAGAGGAACTACGAGTGCCAGCATTGCGGTAAACGCCTCGGCCAGTTTGGTACTCTCAAGAGACATATCCGTGTGGTGCACGAGGGCATCAAGGACTTTGTTTGCGAACTTTGCCAGCGCTCTTTCACTGCCAAAGTATCACTCACCAATCATAAACGCATTCACACAGGGGAAAAGCCCTTTTTGTGCGAGTTGTGTGGGAAGGGGTTTCGAACGCCCCAGCAGATGCACCTCCATGAGCGCATACACACCAACGAGCGCCCCCATTCCTGTCCCTATTGTGAGAAGTGCTTCCGGCGGCGGCCACACCTGCTGGTACACATACGCACACATACTGGAGAAAAACCTTACGAATGTGATGTGTGCAGGCGCGGGTTTGCGCAGAAGAACGACATGAAGAAACATCGGGTGCTACATGACCGATACAGACGATATCGTTGA
- Protein Sequence
- MCCVNEVLSRPFLRCTLLCCRSQDVSVSTGGQDSTRQVYSVWIQTDDDTEEFLCDIAEGIDGEGVVFVSSAAGKDNLLEGTQLPVENSHDWDKIRGELDNGTMIIDEVSDQTIFYVTPQTIKLMGSRRTVKWPPRSCIGEQLYECQFCLKSFRDGGVLLTHLRCHTGFTPFFCKFCGGKFKLSASLKHHLDTCIAAACAEATGDVKKELHPLAKNEQGFFECNYCGKKFKFKANLKEHIRYHTGRPRCKQRCDICTKKFLRRHELLVHLTTDHLDITYMTCDTCNKICISERDLADHKISHSNERPFICLFCGRKFKRKSHLTRHETNHRYQQQGLRPPPPRQKEGLEFKCELCGKNYSTKRQLQNHGFTHTGERNYECQHCGKRLGQFGTLKRHIRVVHEGIKDFVCELCQRSFTAKVSLTNHKRIHTGEKPFLCELCGKGFRTPQQMHLHERIHTNERPHSCPYCEKCFRRRPHLLVHIRTHTGEKPYECDVCRRGFAQKNDMKKHRVLHDRYRRYR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445883;
- 90% Identity
- iTF_01448846;
- 80% Identity
- -