Tmon001152.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema monikensis
Gene Symbol
-
Assembly
GCA_902151445.1
Location
CABFVZ010000020.1:1080513-1106377[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.2 2.5e+02 4.5 0.3 1 23 391 414 391 414 0.92
2 16 0.034 7.1 9.4 0.2 2 20 663 681 662 683 0.93
3 16 0.26 54 6.6 3.1 1 23 689 711 689 711 0.95
4 16 5.5e-05 0.011 18.2 6.8 1 23 717 739 717 739 0.98
5 16 2.8e-05 0.0058 19.1 1.0 1 23 745 767 745 767 0.97
6 16 0.0006 0.12 14.9 1.3 1 23 772 794 772 794 0.95
7 16 0.61 1.3e+02 5.4 0.3 2 23 804 825 803 825 0.96
8 16 0.0036 0.75 12.4 0.7 1 23 831 855 831 855 0.95
9 16 2.6e-07 5.4e-05 25.5 3.2 1 23 861 883 861 883 0.98
10 16 0.069 14 8.4 0.4 1 23 889 911 889 911 0.97
11 16 1.5e-05 0.0032 19.9 0.4 1 23 924 946 924 946 0.98
12 16 0.0064 1.3 11.7 1.8 3 23 954 974 952 974 0.98
13 16 0.0027 0.56 12.9 0.1 1 23 980 1002 980 1002 0.98
14 16 1.5e-05 0.0032 19.9 0.3 1 23 1008 1030 1008 1030 0.96
15 16 3.3e-07 6.9e-05 25.2 0.3 1 23 1036 1058 1036 1058 0.99
16 16 0.00011 0.024 17.2 2.6 1 23 1064 1086 1064 1086 0.98

Sequence Information

Coding Sequence
ATGTTGGAGCGGAGTTGGTTGGTCAGGATAGTAGAAAATAGGCCCGCAGGTGGAGTATTGCTTGGTTGCCGATGTCCTCTTCAGGGTCTTCTGTCGGTAGGTCTTACCAGAGCTGCAGGTGTAAACCATTTCATGCAATCATCGATAAAGAGGATAATCAGGTGGGAAAGAAGGAGTCCCGGCAACAGGGATGTCGCGGGATTTCCCATTGGTGCGTGCAAACTTGAGAGACAGTGCCCATTACGTGAGCCAATAGAGAGAGGAGTTCTCTTGGGTGCTGATTACAGAGGGGAAATTGTCACGGACTgctcagagaacatggactATGGAGCGGTCCAAGCAGTAGAAAGGACAATGGCAGTGACGTTAGACTTGAATAAGTTGGGTGTAGTCGCTGGTCAACTCTGCCGAGTGTGTGCAAGGTTGAGTCAGAGACTAACACCAATATTTGGCCAAAAGGGTATAGAAATAGATTTGGCAACCAAGATCCACACACATCTCCCCATTATGGTGACCGAAGATGATTTGATGCCTGTGTGCCTGTGTGAACCCTGCATACATAAGCTACAAGTGTGCCATAACCTTGTCAATACATGTCTAGAAGGTGATATAAGACTCAGAAAAATAATGGGATTGCCTATAGAACAGGAAGTAATTCCTGAACCAGATTGTgAATTAATAGATTTGGAGAAAGAAGAACCTTCCGAGAAAGAAGAACCTTCCGAGAAAGCTGCAACCCTGGAAGATAAAAACCAAGAGACTGAACACAAGCAAGAAGAAAGTGATGATGATTTTGTTTGGGAAGAGAACCAGTCTGCCGTTGATGTCATCCCTCCTTCCCCTCCACCTGACGAAATCAGGCCTCAAAGAGTTGCCAAGAGGGGAAGACCAAGGAAGTTTCCGGTCCCTCAAGAAATCAAACAAGTTTGTACTCCTCCACTTGTATTCTATGAGTCTAAACATGCCTTTGATTTGCACATGTTAAACCATTTGGAAGCAGAGGAAGGAGAAATCCGTACCTGTATGAGTGAGGATGCAAACAACATTGGTGAGCTAGTTAATGAGCATATTGATCAATCAAATACATCCTCAAAAAAACATCAAGCCTTAGAGTCTCAAAACAGGTTTACTAGAACTGACTTAGAGCCTGCTCCCAAGGATGTATTTTCTTACTTGTGTTCATATTGTAAAGAGACACTGATAGGTACTGATATGTTTCTAGCTCATCAATCCCAGATGCATCCAGATAAAGTGTTTACATGCACTATATGTAAGCCCCATGTTGTGTTCTATGAGACTAAAGAGCTGTTTGAGCGACACATGCTTTGTCATCCACAAGAAATCATAGAAAGGGATGATTCATTGGAGGAAAGTGTAATCACAGCCCTAGATAAACCAGCAACTGAGGATTATGCTGAGACCTTGCCTACAGGAACTACTGATGAAAATGTATCTGTTTCTACTCCTGATGATGCATCTGTTCTTATCACTGCTTCAAATGAAGTTGCTGGCACTTCTGCCTGTCCTATTGATGTCTCTACTCTCATTAAAGATGATTCTGAAAATAACTTCTCTTTTGTTGATGCGCCCATTCCTTATCAAGAGAATCCTGTTGATACCTTCACTTTTTCTAATGCGGAAATTCCTGCCATTAACTCTGATGTCACTGATGTCACTACTAGTGATCCAAGCCATAAGCAACCTGATAACTTGGAAATTACCACTATATTCAATGTTCAAGTTGAAACACCAAACATTTTAACAGGAATCTCAGAACACCAAATTAATTCCAATCTCCGTATGAAACTTTCTAAAGAATTTCAAGGTGTAAGCAAAAGTCTTCAGTCTAGAATAATAGAAACTATTCAAAAGATAGCCTCAACaaagaaatcaaatcaatcaagaCTGGCTTTGAAAAGACCTTATAATCTCAAAGTCAAAAAGACTATAATGAAAAGGAAGAGACTTCGCTCCAAGTTTGGTTGGTATTGCCGACAATGTGACCTTAAATTTGATTCAAGTGAAGAATTGGAAACACACAAGAGTGCAAACACTTGCTCCACACACCCTTGTCAATACTGTGGAAAATTGTTTCactcaaagaaaatattgctgGAACATGAGCGCCTACACACCAATGAGCGACCTTACATGTGTGAGTATTGTGGGAAGAGTTTTCGCACATGCACAATGTTGCGCACCCATCATAATTCTCACAGCACGAACCAAACCTTTGTGTGTCCGGATTGTGGCAAGAGCTATAACAACAAAGCAAGCTTCCACTATCATGCTGCCACCCACAACAGCCAGGAGTTCCTTTGTGACATCTGTGGGAAGAAGCTAAAGCACGCTGGAAGTCTCCGCATCCACAAGCTTAAGCACAGCAACCCAGATGCCTTCAAGCGTGTTTCATGCGACATATGTGGCAACTTATATGAGAGCAGgtACCGAATGATGGAACATCGGCGTTTGCACACTAACGAACGTCCATACAAATGCGCAGAGCCAGattgtttcaaaatgttccGTAAGCTGGAGCAACTTCGACAGCACTCAACTGTTCACACAAACCTACGCAAGTTTAAGTGTGATGTGTGTGAGAAGTCCTTTAAGCGGCGCAGCAATTTGAAGACCCACCGCAAGATCCACTGCCAGGACTACCGCTATAAGTGCAGTGTGTGCTTGCTACCATACAACAGTCTGCGTGAGCTGCTGTCTCATCGCTCTTTACATACCCAAGAAGAACTCAAGCAAGCCAACAAAGAACCATTTGAATGCCCCGAGTGCAAAAAGATCCTGTCGACTAAAGTGTCTTTGCAACAGCATCTGTTAACTCATACCAACTTGGCGCCGTTTGGTTGTAATTTTTGCCAGCGGTCGTTTAGGAGCAAAGTTTCACGTGATGTCCACCTGCGCACACATACAGGAGAAAAGCCTTATGCATGCAAATATTGCGAAGCAAATTTCTCACTGAATGCCAGCCTTGTGGTTCATGAGCGCATTCACACAGGAGAGAAACCCTTCCCTTGCAATATGTGTGACAAGGCTTTTCGTTCAAAGATCAACCTCATGCAACATTCTATTGTACACTCAGAACTTCGCCCGTATGTTTGCAGTGTTTGTAATCGGGCATTTCGCAGGCGAGATGGCCTTGAAACACACATGCGTGTTCATACTAACGAGCGACCGTATGCTTGTAAATGGTGTGATCGTGCATTCAAGCAAAAGGGTGACTGCAACAAACATatgaacacacattttaaaactactacGGTGCCAGTGGCTGAAGATACGTCATCATCTGCATATACTTGCCCATTTtGCGAGAAGAAGGATAGTTTGGTGAGTTATTGTGGTGAACCAGGCAATAGGAAGAATAGCTTGGTGAGTTACCGCAGTGAACCAGATGAGAGGAAGGTTGGCTCAGCGAGGTATGTCGGTGAACCAGAGAGGGGGGATGAGTGGCCGAGTTACTACGATGAACCAGGCAGGATGGTTCGACACGCTACTATGGTGAATCGGTTAGGAGGGATGGCTCGGCGAATTACAACTGTGAATCGGGCAGGATGGTTAGACGAGCTTCTGTGTTGA
Protein Sequence
MLERSWLVRIVENRPAGGVLLGCRCPLQGLLSVGLTRAAGVNHFMQSSIKRIIRWERRSPGNRDVAGFPIGACKLERQCPLREPIERGVLLGADYRGEIVTDCSENMDYGAVQAVERTMAVTLDLNKLGVVAGQLCRVCARLSQRLTPIFGQKGIEIDLATKIHTHLPIMVTEDDLMPVCLCEPCIHKLQVCHNLVNTCLEGDIRLRKIMGLPIEQEVIPEPDCELIDLEKEEPSEKEEPSEKAATLEDKNQETEHKQEESDDDFVWEENQSAVDVIPPSPPPDEIRPQRVAKRGRPRKFPVPQEIKQVCTPPLVFYESKHAFDLHMLNHLEAEEGEIRTCMSEDANNIGELVNEHIDQSNTSSKKHQALESQNRFTRTDLEPAPKDVFSYLCSYCKETLIGTDMFLAHQSQMHPDKVFTCTICKPHVVFYETKELFERHMLCHPQEIIERDDSLEESVITALDKPATEDYAETLPTGTTDENVSVSTPDDASVLITASNEVAGTSACPIDVSTLIKDDSENNFSFVDAPIPYQENPVDTFTFSNAEIPAINSDVTDVTTSDPSHKQPDNLEITTIFNVQVETPNILTGISEHQINSNLRMKLSKEFQGVSKSLQSRIIETIQKIASTKKSNQSRLALKRPYNLKVKKTIMKRKRLRSKFGWYCRQCDLKFDSSEELETHKSANTCSTHPCQYCGKLFHSKKILLEHERLHTNERPYMCEYCGKSFRTCTMLRTHHNSHSTNQTFVCPDCGKSYNNKASFHYHAATHNSQEFLCDICGKKLKHAGSLRIHKLKHSNPDAFKRVSCDICGNLYESRYRMMEHRRLHTNERPYKCAEPDCFKMFRKLEQLRQHSTVHTNLRKFKCDVCEKSFKRRSNLKTHRKIHCQDYRYKCSVCLLPYNSLRELLSHRSLHTQEELKQANKEPFECPECKKILSTKVSLQQHLLTHTNLAPFGCNFCQRSFRSKVSRDVHLRTHTGEKPYACKYCEANFSLNASLVVHERIHTGEKPFPCNMCDKAFRSKINLMQHSIVHSELRPYVCSVCNRAFRRRDGLETHMRVHTNERPYACKWCDRAFKQKGDCNKHMNTHFKTTTVPVAEDTSSSAYTCPFCEKKDSLVSYCGEPGNRKNSLVSYRSEPDERKVGSARYVGEPERGDEWPSYYDEPGRMVRHATMVNRLGGMARRITTVNRAGWLDELLC*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01447806;
90% Identity
iTF_01445037; iTF_01445870; iTF_01446843;
80% Identity
-