Tmon018799.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema monikensis
Gene Symbol
-
Assembly
GCA_902151445.1
Location
CABFVZ010000666.1:18418-37949[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.74 1.5e+02 5.2 0.1 3 23 189 209 188 209 0.97
2 16 0.0061 1.2 11.7 1.8 1 23 215 238 215 238 0.95
3 16 0.11 23 7.8 0.3 3 21 271 289 271 290 0.95
4 16 0.0016 0.33 13.6 0.1 1 20 340 359 340 361 0.94
5 16 0.00056 0.12 15.0 2.0 1 23 367 389 367 389 0.98
6 16 0.00037 0.077 15.6 1.3 3 23 399 419 397 419 0.96
7 16 3.9e-07 8e-05 25.0 2.0 1 23 425 447 425 447 0.98
8 16 0.0026 0.54 12.9 0.0 1 23 453 476 453 476 0.97
9 16 1.3e-05 0.0027 20.2 0.4 2 23 521 542 520 542 0.96
10 16 0.74 1.5e+02 5.2 0.0 2 23 551 572 550 572 0.97
11 16 3.3e-06 0.00068 22.0 0.5 1 23 604 626 604 626 0.98
12 16 4.7e-06 0.00097 21.5 0.6 1 23 632 654 632 654 0.98
13 16 0.00018 0.036 16.6 0.1 1 23 660 684 660 684 0.98
14 16 0.00081 0.17 14.5 2.3 1 23 690 712 690 712 0.97
15 16 0.00026 0.055 16.0 0.9 1 23 718 740 718 740 0.98
16 16 0.045 9.4 9.0 0.1 2 19 750 767 749 767 0.92

Sequence Information

Coding Sequence
ATGGCAGAAAATAGGCCTGTCAAAACCACAGCATCCCCCGCTGCAGAAGAGGTCTGTCGTTTGTGTGGAAAAACCAAAGTGGATCTCGTCTCAATATATTCTGAAGAAGCCTCGGCTAAGAACATACTCCAGAAGATGAAAGACTTGCTCAATATCAATGTTACACTGCAGGATAAGCTATCGAAGCGAGTGTGTCACTCATGTGTGACCCAGCTAACCTTGTGTGATGGCATGGTAGAGTTCTTCATGAAAAACCAGGAGGTGCTCAAGAAAAAATACCCTGAAGACACAGAACCAGGGGAGCTGAGCAAGGATTTGTCAACTGATGCTGATTCTGGTGAGCCAAGTGAAGCTTGTGCTGTGGATGGCGATGAAGCTACTTTAAGTCCAGTTGAAGAACCACCAAACATAAACACTAACGTTTCTACAGACGGGGGTGCTGAGCAGGGTCCAGAACGCACTAAAATGTCTATTGTTGTTCTTGACCCGGAGAGTCTGGGGGTGTCCATCAACCAAGATATGTTGTTTGCCCTTCATGGTCTAGATGCTACTCTACCTGTTGCTTGTGACTTCTGTGAAAATGAATTCGATGACTTGGAGAAGTTTGACATCCATATGGCGAGCCACAAGGAGGTTCGTTTCTTCTCATGCCAACTGTGTACCAACACGTACATGTCCTGGAGCAACCTGGTGGCGCATCGCAAGGCATGCCACGGAGGCTCTGTTCTTAGCTGCGAGGAGTGCAGTGAGCGCCGCTACCATCCGGACCTTGGGCCTGTCAACTATGCTGTTGGGGACTTCCCTGTCGGGTGCGAGGAATGCGGGGCAGGTTTCCATAGCCTCAATGAGTTGTATCGCCATTTCCGAGACCAGGCCAACCACAACACTGTTCGGCGTGTCAAAATTGCCAAGGTGTGTGACGAGCCCAACTCAAagtcaaaagaagaaaaagttgGCCAACCCAGGCTTGCCAAAACTGTAAAGAAAAAGCCAACATTCAGGGCcatgtctgtgcgtttcatgtGCCCGACATGTGGAATCCAGTTTTTTACAGCGGATAAGCTAACGGAGCACCTTGCAAGGCTCCCCAAAGAGGGTTTTGTCTGTGAGACCTGCAATAACAAGTTCTGTACATTGGGCATGTTGAATGCCCACAAGCGCGTGCACTCTCGAGGCAAGTTTGCGGCCAGCATCTGTGAAGTCTGTGGAAAGCACCTCCCGAACAAATCGAGCTACAACCGGCACAAACAGATTCACTCAGGTGAGAAGAACTTCAAATGTGGCTACTGTGGCAAGGCTTTTGTCCGCAAGCATGCTCTTAAAGTCCACATGTATTCACACCCTCTGAAAGAAGACTACTCCTGCCTAGAGTGCTCAATATCGTATGAAGACATTGAGGGCCTACAGAGACACGTCAGGATTGCTCATAAAGATGAGGATGAGACTCTCATGTGTAACATCTGTAAAGAGCATGTGGAAGTTCCCCTGTTCATTGACCACTACAGGGCTTGCCACCTTCTCAAGGAGGATGAGATGCTCTCCAGACGGCTCAGCGCTGTGACTTGCCAAATCTGCTCCAAGGTGTTTTCCACACCGGCAACCTTAAATCGTCATTCTAAGCTCCACAATCCTCTGTTCAGTCGGGCCAGCACATGCGAGATCTGCGAGGAGATTATTGTCGGGCGGAGAAACATCATATCGCATGCCAGGACTCACTATGACGAGTCCAACATGCCAGAGAAATACCAGCGAATCATCCGTTCGCTGGTACGGGATCAGAAGTACCGGAAGACTGCGGCGCAGAAGAGCTACATCTGTGAGTACTGTGGACGTGAGTTCAACAAGACTATAAACCTCCAAATTCACATCCGACGTCATACTGGTGAGAAACCTTATATGTGCCAGATGTGCGGTATGGCGTTTTACACTCGTCAGCAACTGTCTATTCACATCCGAACACATACAGGTGAACGTCCTTACACTTGCAAGGCCGCTGGCTGCGGCAAGACATTCTCCAGCCCTGCGGCTATCTACATGCACAGGAAGATCCACAATGATGCCCAGATGTACCGGTGCCACATTTGTGAGAAGACTTTCACCAAACGACTAACATATATTGGCCACGTTCGAGCACATACTAATGAGCGGCCATTTAGGTGCTCACAATGCCCTGGTGCATTCACTCTGCGGAGCAAGCTGAATTTGCATATGAATAAACACAAGCAAGAGGCAGAGAGAGAGGCACTCACATGCTCAGACTGCAATACTACGTTTGCAACAGTGGAGGATCTAGATGTGCATTGTGCGGACCAGTGTTACATCACTGTGCACACATATGAGGAGGGAGAGGAGCTGGATATTGACGGTCAAGCCCAAGTCATTGTTTTGAACCCAGAGGACTTTGCTGACATTGAGAGCAGTTTTAATGAAGAAGAGGACGGACTTTAA
Protein Sequence
MAENRPVKTTASPAAEEVCRLCGKTKVDLVSIYSEEASAKNILQKMKDLLNINVTLQDKLSKRVCHSCVTQLTLCDGMVEFFMKNQEVLKKKYPEDTEPGELSKDLSTDADSGEPSEACAVDGDEATLSPVEEPPNINTNVSTDGGAEQGPERTKMSIVVLDPESLGVSINQDMLFALHGLDATLPVACDFCENEFDDLEKFDIHMASHKEVRFFSCQLCTNTYMSWSNLVAHRKACHGGSVLSCEECSERRYHPDLGPVNYAVGDFPVGCEECGAGFHSLNELYRHFRDQANHNTVRRVKIAKVCDEPNSKSKEEKVGQPRLAKTVKKKPTFRAMSVRFMCPTCGIQFFTADKLTEHLARLPKEGFVCETCNNKFCTLGMLNAHKRVHSRGKFAASICEVCGKHLPNKSSYNRHKQIHSGEKNFKCGYCGKAFVRKHALKVHMYSHPLKEDYSCLECSISYEDIEGLQRHVRIAHKDEDETLMCNICKEHVEVPLFIDHYRACHLLKEDEMLSRRLSAVTCQICSKVFSTPATLNRHSKLHNPLFSRASTCEICEEIIVGRRNIISHARTHYDESNMPEKYQRIIRSLVRDQKYRKTAAQKSYICEYCGREFNKTINLQIHIRRHTGEKPYMCQMCGMAFYTRQQLSIHIRTHTGERPYTCKAAGCGKTFSSPAAIYMHRKIHNDAQMYRCHICEKTFTKRLTYIGHVRAHTNERPFRCSQCPGAFTLRSKLNLHMNKHKQEAEREALTCSDCNTTFATVEDLDVHCADQCYITVHTYEEGEELDIDGQAQVIVLNPEDFADIESSFNEEEDGL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01447767;
90% Identity
iTF_01447767;
80% Identity
-