Basic Information

Insect: Timema genevievae
Gene Symbol: -
Assembly: GCA_902155825.1
Location: CABFWO010001883.1:24197-35051[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.88 1.7e+02 4.9 0.1 3 23 33 53 32 53 0.97

2 16 0.0048 0.89 12.1 1.8 1 23 59 82 59 82 0.95

3 16 0.089 17 8.1 0.3 3 21 115 133 115 134 0.95

4 16 0.0013 0.23 13.9 0.1 1 20 184 203 184 205 0.94

5 16 0.00044 0.083 15.3 2.0 1 23 211 233 211 233 0.98

6 16 0.00029 0.055 15.9 1.3 3 23 243 263 241 263 0.96

7 16 3e-07 5.7e-05 25.3 2.0 1 23 269 291 269 291 0.98

8 16 0.0014 0.26 13.8 0.0 1 23 297 320 297 320 0.98

9 16 1e-05 0.0019 20.5 0.4 2 23 365 386 364 386 0.96

10 16 0.073 14 8.4 0.1 2 23 395 416 394 416 0.97

11 16 8.7e-07 0.00016 23.9 0.2 1 23 448 470 448 470 0.98

12 16 3.7e-06 0.00069 21.9 0.6 1 23 476 498 476 498 0.98

13 16 0.00014 0.026 16.9 0.1 1 23 504 528 504 528 0.98

14 16 0.00098 0.18 14.3 1.5 1 23 534 556 534 556 0.97

15 16 0.00015 0.028 16.8 0.9 1 23 562 584 562 584 0.99

16 16 0.025 4.7 9.8 0.1 2 19 594 611 593 611 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.88	1.7e+02	4.9	0.1	3	23	33	53	32	53	0.97
2	16	0.0048	0.89	12.1	1.8	1	23	59	82	59	82	0.95
3	16	0.089	17	8.1	0.3	3	21	115	133	115	134	0.95
4	16	0.0013	0.23	13.9	0.1	1	20	184	203	184	205	0.94
5	16	0.00044	0.083	15.3	2.0	1	23	211	233	211	233	0.98
6	16	0.00029	0.055	15.9	1.3	3	23	243	263	241	263	0.96
7	16	3e-07	5.7e-05	25.3	2.0	1	23	269	291	269	291	0.98
8	16	0.0014	0.26	13.8	0.0	1	23	297	320	297	320	0.98
9	16	1e-05	0.0019	20.5	0.4	2	23	365	386	364	386	0.96
10	16	0.073	14	8.4	0.1	2	23	395	416	394	416	0.97
11	16	8.7e-07	0.00016	23.9	0.2	1	23	448	470	448	470	0.98
12	16	3.7e-06	0.00069	21.9	0.6	1	23	476	498	476	498	0.98
13	16	0.00014	0.026	16.9	0.1	1	23	504	528	504	528	0.98
14	16	0.00098	0.18	14.3	1.5	1	23	534	556	534	556	0.97
15	16	0.00015	0.028	16.8	0.9	1	23	562	584	562	584	0.99
16	16	0.025	4.7	9.8	0.1	2	19	594	611	593	611	0.94

Sequence Information

Coding Sequence: ATGTCTATTGTTCTCGACCCGGAGAGTCTGGGGGTGTCCATCAACCAGGAGATGTTGTTTGCCCTTCATGGTCTAGATGCTACCCTACCGGTTGCTTGTGACTTCTGTGAAAGTGAATTCGATGACTTGGAGAAGTTTGACATCCATATGGCGAGCCACAAGGAGGTGCGTTTCTTCTCATGTCAACTCTGTACCAACACGTACATGTCCTGGAGCAACCTGGTGGCGCATCGCAAGGCATGCCACGGAGGCTCTGTTCTTAGCTGCGAGGAGTGCAGTGAGCGCCGCTACCATCCGGACCTCGGTCCTGTCAACTATGCTGTTGGGGACTTCCCTGTGGGGTGCGAGGAGTGCGGGGCGGGTTTCCATAGCCTCAATGAGTTGTATCGCCATTTCCGGGACCAGGCCAACCACAACACTGTTCGGCGTGTCAAAATTGCCAAGGTGTGTGACGAGCCCAACTCAAAGtcaaaagaagaaaaagttgGCCAACCCAGGCTTGCCAAAACTGTAAAGAAAAAGCCAACATTCAGGGCCATGTCTGTGCGTTTCATGTGCCCAACATGTGGGATCCAGTTTTTTACAGCGGATAAGCTCACGGAGCACCTCGCAAGGCTCCCCAAAGAGGGTTTTGTTTGTGAGACCTGCAATAACAAGTTCTGTACATTGGGTATGCTGAACGCCCACAAGCGTGTGCACTCTCGTGGCAAGTTTGCGGCCAGCATCTGCGAAGTCTGCGGGAAGCACCTTCCGAACAAATCGAGCTACAACCGGCACAAACAGATTCACTCAGGCGAGAAGAACTTCAAATGTGGCTACTGTGGCAAGGCTTTTGTCCGCAAGCACGCTCTTAAGGTCCACATGTATTCACACCCTCTGAAAGAAGACTACACGTGCATGGAGTGCTCAATATCGTATGAAGACATTGAGGGTCTACAGAGACATGTCAGGATTGCTCATAAAGATGAGGATGAGACACTCTTGTGTAACATCTGTAAAGAGCATGTGGAGGTTCCCCTGTTCATTGACCACTACAAGGCTTGCCACCTTCTCAAGGAGGATGAGATGCTCTCCAGAAGGCTCAGCGTTGTGACTTGCCAAATCTGCTCCAAGGTGTTTTCCACACCGGCGACCTTAAATCGTCATTCGAAGCTCCACAACCCTCTGTTCAGTCGGGCCAGCACATGCGAGATCTGCCAGGAGACTATTGTCGGGCGGAGAAACGTCATATCACATGCCAGGACTCACTATGACGAGTCCAACATGCCAGAGAAATACCAGCGAATCATCCGTTCGCTGGTACGGGATCAGAAGTACCGCAAGACTGCGGCGCAGAAGAGCTACATCTGTGAGTATTGTGGACGTGAGTTTAACAAGGCTATAAACCTCCAAATTCACATCCGACGTCATACTGGAGAGAAACCTTATATGTGCCAGATGTGTGGGATGGCGTTTTACACTCGTCAGCAACTGTCTATCCACATCCGAACACATACAGGGGAACGTCCTTACACTTGCAAGGCCGCTGGCTGTGGCAAGACATTCTCCAGCCCTGCTGCTATCTACATGCACAGGAAGATCCACAGCGATGCCCAGATGTACCGGTGCCACATCTGTGAGAAGACTTTCGCCAAACGACTAACATATATTGGCCACGTTCGAGCACATACTAATGAGCGGCCATTTAAGTGCTCACAGTGCCCTGGTGCATTCACTCTACGGAGCAAGCTGAACTTGCATATGAATAAACACAAGCAAGAGGCAGAGAGAGAGGCGCTCACATGCTCAGACTGCAATACCACGTTTGCAACAGTGGAGGATCTGGACGCACATTGTGCAGACCAGTGCTACATCACTGTGCACACATATGAGGAGGGAGAGGAGCTGGATATTGACGGTCAAGCCCAAGTCATTGTTTTGAACCCAGAGGACTTTGCTGACATTGAGAACAGTTTTATCGAAGAAGAGGATGGACTTTAA
Protein Sequence: MSIVLDPESLGVSINQEMLFALHGLDATLPVACDFCESEFDDLEKFDIHMASHKEVRFFSCQLCTNTYMSWSNLVAHRKACHGGSVLSCEECSERRYHPDLGPVNYAVGDFPVGCEECGAGFHSLNELYRHFRDQANHNTVRRVKIAKVCDEPNSKSKEEKVGQPRLAKTVKKKPTFRAMSVRFMCPTCGIQFFTADKLTEHLARLPKEGFVCETCNNKFCTLGMLNAHKRVHSRGKFAASICEVCGKHLPNKSSYNRHKQIHSGEKNFKCGYCGKAFVRKHALKVHMYSHPLKEDYTCMECSISYEDIEGLQRHVRIAHKDEDETLLCNICKEHVEVPLFIDHYKACHLLKEDEMLSRRLSVVTCQICSKVFSTPATLNRHSKLHNPLFSRASTCEICQETIVGRRNVISHARTHYDESNMPEKYQRIIRSLVRDQKYRKTAAQKSYICEYCGREFNKAINLQIHIRRHTGEKPYMCQMCGMAFYTRQQLSIHIRTHTGERPYTCKAAGCGKTFSSPAAIYMHRKIHSDAQMYRCHICEKTFAKRLTYIGHVRAHTNERPFKCSQCPGAFTLRSKLNLHMNKHKQEAEREALTCSDCNTTFATVEDLDAHCADQCYITVHTYEEGEELDIDGQAQVIVLNPEDFADIENSFIEEEDGL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01448812; iTF_01449821;
90% Identity: iTF_01448812; iTF_01449821;
80% Identity: -