Tmon052409.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010004783.1:10641-25776[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.51 1.1e+02 5.7 0.2 1 23 359 382 359 382 0.96 2 16 0.076 16 8.3 0.1 2 20 550 568 549 570 0.93 3 16 0.00011 0.023 17.2 4.0 1 23 576 598 576 598 0.96 4 16 6.2e-05 0.013 18.0 1.2 1 23 604 626 604 626 0.98 5 16 1.4e-06 0.00029 23.2 2.2 1 23 632 654 632 654 0.97 6 16 0.0002 0.041 16.4 0.6 1 23 659 681 659 681 0.94 7 16 0.0047 0.96 12.1 2.8 1 23 690 712 690 712 0.97 8 16 0.00055 0.11 15.0 0.4 1 23 718 742 718 742 0.97 9 16 2.1e-06 0.00043 22.7 3.9 1 23 748 770 748 770 0.99 10 16 0.0035 0.73 12.5 0.2 1 23 776 798 776 798 0.98 11 16 0.003 0.62 12.7 0.4 2 23 812 833 811 833 0.97 12 16 0.0023 0.48 13.0 4.6 1 23 839 861 839 861 0.97 13 16 0.048 9.9 8.9 0.2 1 23 867 889 867 889 0.97 14 16 4.2e-06 0.00087 21.7 1.0 1 23 895 917 895 917 0.98 15 16 5.5e-05 0.011 18.2 0.3 1 23 923 945 923 945 0.98 16 16 0.0018 0.37 13.4 5.1 1 23 951 973 951 973 0.98
Sequence Information
- Coding Sequence
- ATGAGCTCTGATATCCACTGTAACACACTTTACAATGACCACAGAAGCCTCACCTCTCTTGGCGTTTGCCACGATTATATAATGAGTTCGGACGTTCCTGTTGAAGCTAGATCGATCAATGACATGGACAAAGACTTgcatttagaaaatgttatgtGTAAGGCAGAGTGTTCAATGGTCCACGAGGAAGTAACGGCTCTTCCTCTAGAAATGGAAAAATATagacTGAATAATCCATTGGATCTAACAAAGCTTGAAGTGCCGACAAGCCAGCTCTGTCGAGTGTGTGCTACATTAAGTGAACCACTGATACCTATCTTTGGTAAGAAGAGCAAGGAAATGGAACTCGTCAAAAAGATACACACTCATCTTCCCATATTGgTGAATGAAAATGATGTGCTACCAGTGAACGTATGTGATCCATGTGTAGAAAAACTACAGATATGTCATGACTTAGTCACAATGTGCTCAGAAAGTGACGTTAAACTTCGGCAAATGATGGGGCTGCCCATTGAAAAAGATATGCCGGAAATGGAAGCAGTAAACGTGGATGTCATTGGCAAAGAAGAACCACTTTGTGATAAACCTTTGCGGGAAGACAAAGTGAACGAGTCTGAATCTGAGGAAGAAGAAGATGAAAGAGACAATGACTCAGATTGGGAAGACCAGCAGGCCTCTGATCCCCCAAGTCCTGCACCCAGTGAACCTAAACGGAAAAGGGGGGTGGCCAAAGTGAGgccaaggaaaattaatataagtgcaAAACTGAAACAACCGACAAAGTCGAAGAGTCCAATGACCCAGAAGGATATCCTCAACATTCTCAAAACACAAGGGGACCAGCACAAGTTGTTCGTCCCTGGAAAGAAATACAAGACAAGCATTTTGAGAAGGGTTGACAAGGCTTCATCCTTAGTGAAGAAAGGTGGGAAAGATACCTGGAAAGGTATATCTGAGGAAACTATTAAGGCTGAAACTTCAACAGAAACCACCGCCGAACAATCTTCAATCACAGAGCCAATAGAAgaactagaaaaatatatcacagtttctgatagtaaaaatattctctcctatgtttgtatgtattgtGCTGAAACTCTGGTTGGGACAGAGAACCTTATTTCCCATCATTCTTCACTGCATACAGATAAAGTTTCTATATGTACACTATGTAGTcctcatataatttattatgagtCCAGACACTCGTATGAAAAGCACATGATACGCCATGCACCAGAATTGAATGAAGTAGACACTGTAGCTCCCCTCCCTATCGCTGTAACAACTTCTGATGATTCCACTGAAGATATAAAACCAGACAACTTAGAGATAACCAGCGTCCTTAATGTTCAAGTAGAGGCCCCAAGATGTATGACAAGATCTGCTAGTAAACTAAACAACGCCAACATCAGAATGGAAATGTCCCAAGAATTTCAAAGTGTCAGTAAAAATATCCAGTCTAAGATTTTAGGAACAATTAGGAAACTAGCCTCgaatagtaaagaaaataagaaaaagggtTTATTGACAAACACAGAGGGTGTTCGAGTCAACAACGAGAATGTCCGCGTTAAGATAATAGGAGGAACAAAGGTACTTATCGAAAGGAAAATGAAGAAACCAACATCTAAATATGGTTGGTACTGCAGACAATGCGATGTAATGTTCGAGTCAAGTGAGGAGTTGGAGGACCACAAAGGAAGAGACATGTGTTCAAACCACCCCTGCCAGTTCTGTGACAAGAAATTTAAGACAAAAAACAGTCTGGTGAAACATGAGCGACTGCACACCAATGAACGACCATACATGTGTGAACAGTGCGGGAAAAGTTTCCGCACACGTACTATACTGCGCAGCCATCTCGACACCCACGATAAGAGCAGGAAGTTCATTTGCACTGACTGTGGCAAGGCGTTCAACAACAAAGCCAACTTCAAGCACCACACTGCCACTCATCTGAACCGAGCATTTCTCTGTGATATATGTGGCAAGACACTCAAGAGCCTGTCATACCTGCGCGTGCACAAGCTCAACCACAAGAACCCTGACCTCTTGAAACGTTTTGCCTGCGATATGTGTGGCAACAAATATGTCAGCAGGCACCAAATGAAACAACATCGCCGTCTGCACACCAATGAACGGCCCTACAAGTGCCCCGACCCCAACTGTTTCAAAATGTTCCGTAACCTAGTGACGCTGAAACAGCATGCCTCTGTCCACACCAACATGCGCAAGTACAAGTGTGAGGCATGTGGGAAAGGCTTCAAGAGGCGCAGTCACCTCATGACTCACCGTAAGACCCATGACCAACATCAGAGGTTCAGGTGCGGCATCTGCCCAGACTCATTCAACAATCTGGGTGAGTTGCTTTCTCATCGCTCCTCACATACTGAGGAAGAACTCAAACTCGCCAACAAGGACTCGTTGAAGTGTCCCGAATGTAGTAAGATCCTTTTAAACAAAGTGACTTTGAAGAATCATATGTTAACTCACTCTAACGAAAGGCCGTTTCCTTGTAGTTTCTGTGAAAAGTCGTTCAAAAACAAAACTCACCGGGACAATCACCTTCGTCTACACACGGGTGAAAAGCCTTTCATATGTCGTTTCTGCAAGGCAGCATTTACTGTGAGTGAACGCTTGGTGGTGCATGAGCGAATACACACAGGGGAGACACCATTCAAGTGCAACTTGTGCGACAAGGCATTCCGGTCTAAGATCAATCTCATCCAGCATTCCAAGATCCATTCAGACAATCGACCGTTTATATGCTCGTTGTGTGCCCGAGCGTTCCGCCGCCGGGAGGCACTTGATATGCACATGCGCACTCACACCGGAGAACGGCCCTATGCCTGCAAATTTTGTAACCGTGCTTTTAAACAGAAGGGAGATTGCAACAAACATCAGAAAACACATTTCAAGTCTGGGGGGCCAGTTATGGAGACACCAATGGTTTAG
- Protein Sequence
- MSSDIHCNTLYNDHRSLTSLGVCHDYIMSSDVPVEARSINDMDKDLHLENVMCKAECSMVHEEVTALPLEMEKYRLNNPLDLTKLEVPTSQLCRVCATLSEPLIPIFGKKSKEMELVKKIHTHLPILVNENDVLPVNVCDPCVEKLQICHDLVTMCSESDVKLRQMMGLPIEKDMPEMEAVNVDVIGKEEPLCDKPLREDKVNESESEEEEDERDNDSDWEDQQASDPPSPAPSEPKRKRGVAKVRPRKINISAKLKQPTKSKSPMTQKDILNILKTQGDQHKLFVPGKKYKTSILRRVDKASSLVKKGGKDTWKGISEETIKAETSTETTAEQSSITEPIEELEKYITVSDSKNILSYVCMYCAETLVGTENLISHHSSLHTDKVSICTLCSPHIIYYESRHSYEKHMIRHAPELNEVDTVAPLPIAVTTSDDSTEDIKPDNLEITSVLNVQVEAPRCMTRSASKLNNANIRMEMSQEFQSVSKNIQSKILGTIRKLASNSKENKKKGLLTNTEGVRVNNENVRVKIIGGTKVLIERKMKKPTSKYGWYCRQCDVMFESSEELEDHKGRDMCSNHPCQFCDKKFKTKNSLVKHERLHTNERPYMCEQCGKSFRTRTILRSHLDTHDKSRKFICTDCGKAFNNKANFKHHTATHLNRAFLCDICGKTLKSLSYLRVHKLNHKNPDLLKRFACDMCGNKYVSRHQMKQHRRLHTNERPYKCPDPNCFKMFRNLVTLKQHASVHTNMRKYKCEACGKGFKRRSHLMTHRKTHDQHQRFRCGICPDSFNNLGELLSHRSSHTEEELKLANKDSLKCPECSKILLNKVTLKNHMLTHSNERPFPCSFCEKSFKNKTHRDNHLRLHTGEKPFICRFCKAAFTVSERLVVHERIHTGETPFKCNLCDKAFRSKINLIQHSKIHSDNRPFICSLCARAFRRREALDMHMRTHTGERPYACKFCNRAFKQKGDCNKHQKTHFKSGGPVMETPMV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445858;
- 90% Identity
- iTF_01445858;
- 80% Identity
- -