Basic Information

Insect: Timema cristinae
Gene Symbol: -
Assembly: GCA_002928295.1
Location: CM009479.1:28159913-28173925[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.44 64 5.7 0.2 1 23 344 367 344 367 0.96

2 17 8.7 1.3e+03 1.6 1.5 9 23 383 397 373 397 0.78

3 17 0.065 9.6 8.3 0.1 2 20 536 554 535 556 0.93

4 17 9.7e-05 0.014 17.2 4.0 1 23 562 584 562 584 0.96

5 17 5.3e-05 0.0078 18.0 1.2 1 23 590 612 590 612 0.98

6 17 1.2e-06 0.00018 23.2 2.2 1 23 618 640 618 640 0.97

7 17 0.00017 0.025 16.4 0.6 1 23 645 667 645 667 0.94

8 17 0.004 0.59 12.1 2.8 1 23 676 698 676 698 0.97

9 17 0.00048 0.07 15.0 0.4 1 23 704 728 704 728 0.97

10 17 1.8e-06 0.00026 22.7 3.9 1 23 734 756 734 756 0.99

11 17 0.0031 0.45 12.5 0.2 1 23 762 784 762 784 0.98

12 17 0.0026 0.38 12.7 0.4 2 23 798 819 797 819 0.97

13 17 0.002 0.3 13.1 4.6 1 23 825 847 825 847 0.97

14 17 0.042 6.1 8.9 0.2 1 23 853 875 853 875 0.97

15 17 2.5e-06 0.00037 22.2 1.1 1 23 881 903 881 903 0.98

16 17 4.7e-05 0.0069 18.2 0.3 1 23 909 931 909 931 0.98

17 17 0.0016 0.23 13.4 5.1 1 23 937 959 937 959 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.44	64	5.7	0.2	1	23	344	367	344	367	0.96
2	17	8.7	1.3e+03	1.6	1.5	9	23	383	397	373	397	0.78
3	17	0.065	9.6	8.3	0.1	2	20	536	554	535	556	0.93
4	17	9.7e-05	0.014	17.2	4.0	1	23	562	584	562	584	0.96
5	17	5.3e-05	0.0078	18.0	1.2	1	23	590	612	590	612	0.98
6	17	1.2e-06	0.00018	23.2	2.2	1	23	618	640	618	640	0.97
7	17	0.00017	0.025	16.4	0.6	1	23	645	667	645	667	0.94
8	17	0.004	0.59	12.1	2.8	1	23	676	698	676	698	0.97
9	17	0.00048	0.07	15.0	0.4	1	23	704	728	704	728	0.97
10	17	1.8e-06	0.00026	22.7	3.9	1	23	734	756	734	756	0.99
11	17	0.0031	0.45	12.5	0.2	1	23	762	784	762	784	0.98
12	17	0.0026	0.38	12.7	0.4	2	23	798	819	797	819	0.97
13	17	0.002	0.3	13.1	4.6	1	23	825	847	825	847	0.97
14	17	0.042	6.1	8.9	0.2	1	23	853	875	853	875	0.97
15	17	2.5e-06	0.00037	22.2	1.1	1	23	881	903	881	903	0.98
16	17	4.7e-05	0.0069	18.2	0.3	1	23	909	931	909	931	0.98
17	17	0.0016	0.23	13.4	5.1	1	23	937	959	937	959	0.98

Sequence Information

Coding Sequence: ATGAGCTCTGATATCCACTGTAACACACTTTACAATGACCACAGAAGCCTCACCTCTCTTGGCGTTTGCCACGATTACATAATGAGTTCGGACGTTCCTGTTGAAGCTAGATCGATCAATGACATGGACAAAGACTTgcatttagaaaatgttatgtGTAAGGCAGAGTGTTCAATGGTCCACGAGGAAGTAACGGCTCTTCCTCTAGAAATGGAAAAATATagacTGAATAATCCATTGGACCTAACAAAGCTTGAAGTGCCGACAAGCCAGCTCTGTCGAGTGTGTGCTACATTAAGTGAACCACTGATACCTATCTTTGGTAAGAAGAGCAAGGAAATGGAACTCGTCAAAAAGATACACACTCATCTTCCCATATTGgTGAATGAAAATGATGTGCTACCAGTGAACGTATGTGATCCATGTGTAGAAAAACTACAGATATGTCATGACTTAGTCACAATGTGCTCAGAAAGTGACGTTAAACTTCGGCAAATGATGGGGCTGCCCATTGAAAAAGATATGCCGGAAATGGAAGCAGTAAACGTGGATGTCATTGGCAAAGAAGAACCACTTTGTGATAAACCTTTGCGGGAAGACAAAGTGAACGAGTCTGAATCTGAGGAAGAAGAGGATGAAAGAGACAATGACTCAGATTGGGAAGACCAGCAGGCCTCTGATCCCCCAAGTCCTGCACCCAGTGAACCTAAACGGAAAAGGGGGGTGGCCAAAACAAAGTCGAAGAGTCCAATGACCCAGAAGGATATCCTCAACATTCTCAAAACACAAGGGGACCAGCACAAGTTGTTCGTCCCTGGAAAGAAATACAAGACAAGCATTTTGAGAAGGGTTGACAAGGCTTCATCCTTAGTGAAGAAAGGTGGGAAAGATACCTGGAAAGGTATATCTGAGGAAACTATTAAGGCTGAAACTTCAACAGAAACCACCGCCGAACAATCTTCAATCACAGAGCCAATAGAAgaactagaaaaatatatcacagtttctgatagtaaaaatattctctcctatgtttgtatgtattgtGCTGAAACTCTGGTTGGGACAGAGAACCTTATTTCCCATCATTCTTCACTGCATACAGATAAAGTTTCTATATGTACGCTATGTAGTcctcatataatttattatgagtCCAGACACTCGTATGAAAAGCACATGATACGCCATGCACCGGAATTGAATGAAGTAGACACTGTAGCTCCCCTCCCTATCGCTGTAACAACTTCTGCTGATGATTCCATTGAAGATATAAAACCAGACAACTTAGAGATAACCAGCGTCCTTAATGTTCAAGTAGAGGCCCCAAGATGTATGACAAGATCTGCTAGTAAACTAAACAACGCCAACATCAGAATGGAAATGTCCCAAGAATTTCAAAGTGTCAGTAAAAATATCCAGTCTAAGATTTTAGGAACAATTAGGAAACTAGCCTCgaatagtaaagaaaataagaaaaagggtTTATTGACAAACACAGAGGGTGTTCGAGTCAACAACGAGAATGTCCGTGTTAAGATAATAGGAGGAACAAAGGTACTTATCGAAAGGAAAATGAAGAAACCAACGTCTAAATATGGTTGGTACTGCAGACAATGCGATGTAATGTTCGAGTCAAGTGAGGAGTTGGAGGATCACAAAGGAAGAGACATGTGTTCAAACCACCCCTGCCAGTTCTGTGACAAGAAATTTAAGACAAAAAACAGTCTGGTGAAACATGAGCGACTGCACACCAATGAACGACCATACATGTGTGAACAGTGCGGGAAAAGTTTCCGCACACGTACTATACTGCGCAGCCATCTCGACACCCACGATAAGAGCAGGAAGTTCATTTGCACTGACTGTGGCAAGGCGTTCAACAACAAAGCCAACTTCAAGCACCACACTGCCACTCATCTGAACCGAGCATTTCTCTGTGATATATGTGGCAAGACACTCAAGAGCCTGTCATACCTGCGCGTGCACAAGCTCAACCACAAGAACCCTGACCTCTTGAAACGTTTTGCCTGCGATATGTGTGGCAACAAATATGTCAGCAGGCACCAAATGAAACAACATCGCCGTCTGCACACCAATGAACGGCCATACAAGTGCCCCGACCCCAACTGTTTCAAAATGTTCCGTAACCTAGTGACGCTGAAACAGCATGCCTCTGTCCACACCAACATGCGCAAGTACAAGTGTGAGGCATGTGGGAAAGGCTTCAAGAGGCGCAGTCACCTCATGACTCACCGTAAGACCCATGACCAACATCAGAGGTTCAGGTGCGGCATCTGCCCAGACTCATTCAACAATCTGGGTGAGTTGCTTTCTCATCGCTCCTCACATACTGAAGAAGAACTCAAACTCGCCAACAAGGACTCGTTGAAGTGTCCCGAATGTAGTAAGATCCTTTTAAACAAAGTGACTTTGAAGAATCATATGTTAACTCACTCTAACGAAAGGCCGTTTCCTTGTAGTTTCTGTGAAAAGTCGTTCAAAAACAAAACTCACCGGGACAATCACCTTCGTCTACACACGGGTGAAAAGCCTTTCATATGTCGTTTCTGCAAGGCAGCATTTACTGTGAGTGAACGCTTGGTGGTGCATGAGCGAATACACACAGGGGAGACACCATTCAAGTGCAACATGTGCGACAAGGCATTCCGGTCTAAGATCAATCTCATCCAGCATTCCAAGATCCATTCAGACAATCGACCATTTATATGCTCGTTGTGTGCCCGAGCGTTCCGCCGCCGGGAGGCACTTGATATGCACATGCGCACTCACACCGGAGAACGGCCCTATGCCTGCAAATTTTGTAACCGTGCTTTTAAACAGAAGGGAGATTGCAACAAACATCAGAAAACACATTTCAAGTCTGGGGGGCCAGTTATGGCGACACCAATGGTTTAG
Protein Sequence: MSSDIHCNTLYNDHRSLTSLGVCHDYIMSSDVPVEARSINDMDKDLHLENVMCKAECSMVHEEVTALPLEMEKYRLNNPLDLTKLEVPTSQLCRVCATLSEPLIPIFGKKSKEMELVKKIHTHLPILVNENDVLPVNVCDPCVEKLQICHDLVTMCSESDVKLRQMMGLPIEKDMPEMEAVNVDVIGKEEPLCDKPLREDKVNESESEEEEDERDNDSDWEDQQASDPPSPAPSEPKRKRGVAKTKSKSPMTQKDILNILKTQGDQHKLFVPGKKYKTSILRRVDKASSLVKKGGKDTWKGISEETIKAETSTETTAEQSSITEPIEELEKYITVSDSKNILSYVCMYCAETLVGTENLISHHSSLHTDKVSICTLCSPHIIYYESRHSYEKHMIRHAPELNEVDTVAPLPIAVTTSADDSIEDIKPDNLEITSVLNVQVEAPRCMTRSASKLNNANIRMEMSQEFQSVSKNIQSKILGTIRKLASNSKENKKKGLLTNTEGVRVNNENVRVKIIGGTKVLIERKMKKPTSKYGWYCRQCDVMFESSEELEDHKGRDMCSNHPCQFCDKKFKTKNSLVKHERLHTNERPYMCEQCGKSFRTRTILRSHLDTHDKSRKFICTDCGKAFNNKANFKHHTATHLNRAFLCDICGKTLKSLSYLRVHKLNHKNPDLLKRFACDMCGNKYVSRHQMKQHRRLHTNERPYKCPDPNCFKMFRNLVTLKQHASVHTNMRKYKCEACGKGFKRRSHLMTHRKTHDQHQRFRCGICPDSFNNLGELLSHRSSHTEEELKLANKDSLKCPECSKILLNKVTLKNHMLTHSNERPFPCSFCEKSFKNKTHRDNHLRLHTGEKPFICRFCKAAFTVSERLVVHERIHTGETPFKCNMCDKAFRSKINLIQHSKIHSDNRPFICSLCARAFRRREALDMHMRTHTGERPYACKFCNRAFKQKGDCNKHQKTHFKSGGPVMATPMV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01448805;
90% Identity: iTF_01448805;
80% Identity: -