Tmon002669.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010000054.1:637221-643673[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00021 0.043 16.4 2.6 1 23 308 330 308 330 0.96 2 12 0.00052 0.11 15.1 0.5 2 23 333 355 332 355 0.95 3 12 5.2e-06 0.0011 21.4 1.6 2 23 396 417 395 417 0.97 4 12 0.00049 0.1 15.2 0.2 1 23 423 445 423 445 0.95 5 12 0.00057 0.12 15.0 2.5 1 23 451 473 451 473 0.98 6 12 4.6e-05 0.0095 18.4 3.2 1 23 479 501 479 501 0.98 7 12 0.002 0.41 13.3 2.7 1 23 507 529 507 529 0.96 8 12 2.2e-06 0.00045 22.6 2.1 1 23 537 559 537 559 0.98 9 12 0.0021 0.44 13.2 0.2 1 23 565 587 565 587 0.96 10 12 3.3e-05 0.0068 18.9 1.1 1 23 593 615 593 615 0.98 11 12 5.6e-06 0.0012 21.3 0.7 1 23 621 643 621 643 0.98 12 12 1.1e-05 0.0024 20.3 0.9 1 23 649 671 649 672 0.95
Sequence Information
- Coding Sequence
- ATGGCAAAGCTTATTGACCATTTAGCTGTTTTGAAGGATTTATGTCGATTATGTGCAGCTAAAACAACAGTTATAATGGGTCTTCACATATTTGGAAGTGAGGGTGACGTTAGacaattgtataaaaaaataactgctTGTTTGCCAGTGGAGATCGCTCCGACAGATAAACTACCCAAAATGGTCTGTCAAGATTGTGTTACTAAGTTAGATCTTTTGTTCGATTTCCGAGAGAAAAGTATTAAGACTGAAAGCTTACTATCAAGATTATTGAAGGAAAAGGAATCTCTTTCTATGATTGTGGTGGAAAACAATGGAGCAGTGATAACGGAAAATATTGAAGCGGAGCAGCAACTTCATCTTGAACAATGCCAACACGTGTTGaaacagcaacaacaacaacaacaacaacagttTGTTGAGCTGAGTCGGCAAGAAGAGGTGTCCTTGTCGCAGCAGGTGCAAACCCTCCCCAATGACGTAGACGTTCAGTCCCTGGGCAGTGTGCAGGTGGAGTCTGAATCTCAGGAGGAAGAACGAGCGCCATCACATAACGTCTCCGAGGTGTCGACGAACGTCAAGTGTGAGCCGGATGTGTTGATCAAGGTGGAGGAGATGGCAAATCTCATTGCGCGGGACAGCGACATCGACACAGATATTGAGAGCGACTCGGCGAGCGAAGACAGCGAGGGGAACGATGCGGAGGACCACCGGGCGAGCACCCCGCTGGGGGTGGAGCGGGAAGAGGGGGGCGACTATTTGGCTGAGGCATCAACTAGTCAAGATTTGCAGAGGCTAGCCAACTGTGAGGGCGCTGTCAACTCTTACGAAGGAGGAGACAGCTTCATGACACCCGCCACCAATGGTTTACTGCTCCTCTCGTGCCCTCAAAAGACCGAAGGACTGGAACAGGCGACATGGTTCTTTTGCAACATGTGCGGCAAATCCTTCGGTCAGCAGGAGGACTTCCACCTCCACTACGAGAGTCACTGCAACAAGTGCAACTCGTGCGGGGCCCTCTTCACCAACAAAGACGCACTGAAGGCTCACCGGAAAGAGATGCACCCACGGAAGAATGTCAAGCTTGAAAAAGAGATAACGCCGGTGGCGGTGGGCGTGAATGCCGGGAGGAAAGCGGTTCTGAGCTCCTCGGCGGCGGCCAGGAGGAAGAAGTGGGAGCCAAAAGTGTGTTCCGAGTGCGGGAAGCAATACAGGACTAACTACAAGTTGTCGGAACACATGAGGAAGCACACGGGGGAGCGACCCTTCGCCTGCTCGTCTTGTCCCAAGTCTTTCCGATCCAAGATTGGGCTGGCGCAGCACGAGGCCAAACACACCGGGCAGTACGAGTTCTCGTGTAGCACCTGCGGGAAAGGCTTCCAATGCAAGTCGTACCTTATCGTCCACCAGCGCGTACACAGCAACCTGAAGCCGTACCCGTGCCCGACGTGCAGCCGGCACTTTAAGACGAAGCAGTCCCTTCTGGACCACCAGAACCGTCATCTGGGGGTCAAGCCATACCTTTGTGACACATGTGGACGCCGGTTCATCACCAAGGGGCTTTGCAAGTCGCACCAAAGGGTACACTCCGGGAAAGACAACAAGCAGTACCCGTGTATGGTGTGCCACAAGATGTTTGTGAGCAAGTCGTACCTCACCACACACCTGCGCATCCATACAGGGGAGAAACCCTACATGTGTGagGTGTGCGGTAAGGGCTTCCTGACACGTGTTGACCTGCGCATTCACTCCACCATGCACACCGGCGAGAAGAGCTTTGTGTGCGAGTGGTGTGGGAAGGCATTTGCCCGCCGGGACGCTCTGCGCTGTCATCGACGCAGCCATACGGGCGAGCGTCCTTATCGTTGTGACATCTGCGGGCAGTCGTTCACGCAATTCTCCCCGCTCACAATCCACAAGCGCCTGCATACAGGTGAACGCCCCTACCCTTGCGAGATATGTGGCAAGGCGTTCGTCTCGAGGTCGACCATGTCGGCGCACAGCAAGAAACACCATACTTAG
- Protein Sequence
- MAKLIDHLAVLKDLCRLCAAKTTVIMGLHIFGSEGDVRQLYKKITACLPVEIAPTDKLPKMVCQDCVTKLDLLFDFREKSIKTESLLSRLLKEKESLSMIVVENNGAVITENIEAEQQLHLEQCQHVLKQQQQQQQQQFVELSRQEEVSLSQQVQTLPNDVDVQSLGSVQVESESQEEERAPSHNVSEVSTNVKCEPDVLIKVEEMANLIARDSDIDTDIESDSASEDSEGNDAEDHRASTPLGVEREEGGDYLAEASTSQDLQRLANCEGAVNSYEGGDSFMTPATNGLLLLSCPQKTEGLEQATWFFCNMCGKSFGQQEDFHLHYESHCNKCNSCGALFTNKDALKAHRKEMHPRKNVKLEKEITPVAVGVNAGRKAVLSSSAAARRKKWEPKVCSECGKQYRTNYKLSEHMRKHTGERPFACSSCPKSFRSKIGLAQHEAKHTGQYEFSCSTCGKGFQCKSYLIVHQRVHSNLKPYPCPTCSRHFKTKQSLLDHQNRHLGVKPYLCDTCGRRFITKGLCKSHQRVHSGKDNKQYPCMVCHKMFVSKSYLTTHLRIHTGEKPYMCEVCGKGFLTRVDLRIHSTMHTGEKSFVCEWCGKAFARRDALRCHRRSHTGERPYRCDICGQSFTQFSPLTIHKRLHTGERPYPCEICGKAFVSRSTMSAHSKKHHT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450833;
- 90% Identity
- iTF_01446892;
- 80% Identity
- -