Tmon041934.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010002738.1:36547-39589[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.16 1.6e+03 0.9 0.0 35 46 20 31 8 33 0.84 2 11 0.044 4.5e+02 2.7 0.0 18 46 41 68 39 72 0.86 3 11 0.0077 78 5.1 0.3 9 46 59 96 57 112 0.83 4 11 0.068 6.9e+02 2.1 0.1 12 45 90 123 86 127 0.59 5 11 0.0013 14 7.5 0.6 7 46 135 174 130 231 0.82 6 11 0.02 2e+02 3.8 0.2 33 46 245 258 220 275 0.73 7 11 0.0027 27 6.6 0.2 20 46 274 300 270 303 0.87 8 11 0.018 1.8e+02 3.9 1.0 30 46 340 356 312 399 0.70 9 11 0.0088 90 4.9 0.1 10 46 404 440 399 456 0.82 10 11 0.0018 18 7.1 0.0 7 46 457 496 451 499 0.90 11 11 0.0023 23 6.8 0.1 8 46 500 538 497 553 0.88
Sequence Information
- Coding Sequence
- ATGCAGTATTTGGCCTCTAGATCACCCACTGTAAAAGACATCAAGCAGTATTTGACCTTTAGATCACCCACTGGAAAGGACATCAAGCAGTATTTGGCCTTTAGATCACCCACTGTAAAGGACATCAAGCAATCATCCACTGGAAAGGACAGCAAGCTGTATTTGGCCTTTAGATCACCCACTAGAAAGGACATCAAGCAGTATTTGGCCTTAAGATCATCCACTGGAAAGGACATCAAGCAGTATCTGTCTTTTAGATCACCCACTGGAAAGGACATCAAGCAGTATTTGGCCTTAAGATCTCACACTGGAAAGGACATCAAGCAGTATTTGACCTTTAGATCACCCACTGGAAAGGACATCAACCAGTATTTGGCCTTAAGATCATCCACTGGAAAGGACATCAAATCACCCACTGGAAATGACATCAAGCAGTATTTGGCCTTAAGATCATCCAATGGAAAGGACATCAAGCAGTATCTGGCTTTTAGATCACCTACTGGAAAGGACATCAAGCAGTATTTGACCTTTAAATCACCCACTGGAAAGGACATAAAGAAGTATTTGACCTTTAGATCACCCACTGGAAAGGACATCAAGCAGTATTTGGCCTTTAGATCACCCATTGTAAAGAACATCAAGCAGTATTTGGCCTCTAGATCACCCACTGTAAATGATATAAAGCAGTATTTGGCCTCTAGATCACCCACTGGAAAGGACATCAAGCAGTATTTGGCCTTTATATCACCTATTGGAAAGGACTTAAAGCAGTATTTGGCCTTTAAATCACCCACTGGAAGGCATATCAAGCAATATTTGACCATCAGATCATCCACTGGAAAGTACATCAAGCATTATTTGGCCTTTAGTTCACCCACTGGAAAggaaataaagcagtatttggCCTTTAGATCACCCACTAGAAGGCATATCAAGCTGTATTTGGCCTTTAGATCATCCACTGGAAAGGACATTACACAGTATTTGGCCTTTAGATCACCCACTGGAAAGGACTTCAAGCAGTATTTGGCCTTTAGATCACCCACTGGAAAGGAAATCAAGCAATATTTGGCCTTAAGATCATCCACTGGAAAGGACATCAAGCAGTATTTGGCCTTTAGATCATCCACTGGAAAGGACATTATACAGTATTTGGCCTTTAGATCACCCTCTGGAAAGGACTTCAAGCTGTATTTGGCCTTTAGATCACCCACTGTAAAGGACATCAAGCAATATTTGGCCTTAAGATCATCCACTGGAAAGGACATCAAGCAGTATTTGGCCTTTAGATCACCCACTGGAAAGGACATCAAGCAATATTTGGCCTTAAGATCATCCACTGGAAAGGACATCAAGCAGTATTTAGCCTTAAGATCACCCACTGGAAAGGACCTCAATAAGTATTTGGCCTTAAGATCATCCACTGGAAAGGGCATCAAGCAGTATTTGGCCTTTAGATCACCCACTGGAAAGGACCTCAAGCAGTATTTGGCCTTAAGATCATCCACTGGAAAGGGCATCAAGCAGTATTTGGCCTTTAGATCATCCACTGGAAAGGACATCAAGCAGTATTTGGCCTTTAGATCACCCACTGGAAAGGACCTCAAGCAGTATTTGGCCTTAAGATCATCCACTGGAAAGGACATCAAGCAGTACCTGGCCCTATGA
- Protein Sequence
- MQYLASRSPTVKDIKQYLTFRSPTGKDIKQYLAFRSPTVKDIKQSSTGKDSKLYLAFRSPTRKDIKQYLALRSSTGKDIKQYLSFRSPTGKDIKQYLALRSHTGKDIKQYLTFRSPTGKDINQYLALRSSTGKDIKSPTGNDIKQYLALRSSNGKDIKQYLAFRSPTGKDIKQYLTFKSPTGKDIKKYLTFRSPTGKDIKQYLAFRSPIVKNIKQYLASRSPTVNDIKQYLASRSPTGKDIKQYLAFISPIGKDLKQYLAFKSPTGRHIKQYLTIRSSTGKYIKHYLAFSSPTGKEIKQYLAFRSPTRRHIKLYLAFRSSTGKDITQYLAFRSPTGKDFKQYLAFRSPTGKEIKQYLALRSSTGKDIKQYLAFRSSTGKDIIQYLAFRSPSGKDFKLYLAFRSPTVKDIKQYLALRSSTGKDIKQYLAFRSPTGKDIKQYLALRSSTGKDIKQYLALRSPTGKDLNKYLALRSSTGKGIKQYLAFRSPTGKDLKQYLALRSSTGKGIKQYLAFRSSTGKDIKQYLAFRSPTGKDLKQYLALRSSTGKDIKQYLAL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -