Tgen028930.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010002470.1:20199-22714[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.36 4.5e+03 -0.1 0.3 34 45 100 110 80 116 0.47 2 2 8.8e-26 1.1e-21 78.7 17.1 1 69 118 186 118 187 0.97
Sequence Information
- Coding Sequence
- ATGAGCTCTGCCAAAAACATCTACCCCTCTGCCCCACTGCTGGAGCAGGAAGGTTTGGCGATGGCCAACGCTCCCCCGTCGTATGAAGAAGCAGTTGGGGGTGCGCGTGGCTATCTACCTGTCCACGTACCTTCGCCTGTACCTCCTGCGGGACCCCCACTGCAACCACATGCTTGTAAGTCTCCGCTATCCAGAGATATAGCCCCTGGACCTCCGCCCATGATGCCTGCGACTCCACAGATGCAGAACATGCCACAAGTTCCACACACAACTACGACAGGCAAGTTGTGTGAACGCTTCCTGTTTACCTCGTGTTCTGGCTGTTTGATAATTGGTCCAGTATCGTTGGGTCCTAAACCAGCCAAAATATCGTGCCCTGTTTGCCGCAACAATATTAAAACCAGCACCACCACCGAGAACCAGACGGGGGCTCACGTTGCTTGTCTTCTAATGTGCCTGCTCGGGTTTTGCCTGTGTTCGTGCATTCCGTACTGCATGGACTCGTGTAAAAAGGTTCGCCACTTGTGCCCTAACTGTAAGAGCTACCTGGGTACCTACACCGGCTAA
- Protein Sequence
- MSSAKNIYPSAPLLEQEGLAMANAPPSYEEAVGGARGYLPVHVPSPVPPAGPPLQPHACKSPLSRDIAPGPPPMMPATPQMQNMPQVPHTTTTGKLCERFLFTSCSGCLIIGPVSLGPKPAKISCPVCRNNIKTSTTTENQTGAHVACLLMCLLGFCLCSCIPYCMDSCKKVRHLCPNCKSYLGTYTG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449151;
- 90% Identity
- iTF_01445334;
- 80% Identity
- -