Tgen045401.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010006061.1:18799-30463[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.005 74 5.6 0.0 18 47 106 136 101 141 0.79 2 8 0.0014 21 7.3 0.0 21 44 138 161 132 171 0.89 3 8 0.19 2.8e+03 0.5 0.1 21 36 166 181 162 193 0.80 4 8 0.027 4e+02 3.2 0.0 21 44 194 217 186 221 0.91 5 8 0.0012 17 7.6 0.2 21 45 222 246 218 250 0.90 6 8 0.013 2e+02 4.2 0.3 21 44 250 273 246 282 0.85 7 8 0.28 4.1e+03 -0.0 0.0 22 44 279 301 275 306 0.86 8 8 0.01 1.5e+02 4.5 0.0 18 43 303 328 298 337 0.82
Sequence Information
- Coding Sequence
- ATGATGTTCCCCTGCAGCTTTTGTGATAATGTTTACACTAGACCAGAGTATCTCGGGAGGCACAACTGCAGGAGGAGTAAGATGTCAAAGGCAAAAAGTCGGCGCAAGAGGCCTGTTGAATTTATCTTCAACGAAAGCGAGCCTTCGAACAGCGTCATCAGACCGGACAGGTTCTCTTGCAGCGTGTGTGGCAAGATGTTTGTTCGGCGCTACCATCTCACGGCGCATGAGAAGTACCACTCTAATGTCAAACCGTTTGAGTGTACGATGTGTGACTCAAAGTTCCACCGGAAAACGGACCTGACTGTGCACTCGCGCATTCACAGCGGGGAGAAGCCCTTTGAGTGCACGATATGTGGGGCGCGCTTCAATCAGAACTCTATACTGACCACGCACGTACGCATCCACACGGGTGAGAAACCATTTGGCTGCACCGTGTGTGGGGAGAAGTTCCGCAAGAGCTCGTACTTGAAGAGACACTTCATGAACCATACAGGAGAGAGACCCCATGTCTGTTCCGTGTGTGGGGCCAAGTTCAGGCTCAAATCTGTGTTCACCGCTCACTTCAGGATACACACGGGGGAAAAACCGTTTGCTTGTACCTTTTGCGACTCGCGGTTCAAACAGAACTCTGACCTGAAGGCTCACATCAGGACGCATACGGGCGAGAAGCCATATGCCTGCACCGTCTGTCCCGCGCGGTTCAGCCAGAGCTCAGCACTCAAGTCACATGTACGCATCCATACGGGCGAACGTCCATACTGCTGCAATGTTTGCTCTCTCAAGTTCAGAGCAAAGTCAGATCTGAAACGACATTCATTCACTCATGTGGCGGACAAACCATTCAACTGCGGAGATTGCGGCGCTAAATTCAACCAGCTGGCGCATCTTAGGAACCATACACGCCGGCACACAGGTGAGAAGCCATTTTCTTGCCCACTTTGTGGTAAAAAGTTTGGTCGGTCGTCAACTCTTGCCAAGCACAAAGCAAGTCACAAGGAGATACGATACAACTGTTTGGAGTGCCCCGAGAAGTTCAAGACTTTGGTCACTAATACTTTGTTCCTGAGTGTTGGTCACACTACTGGGGGCTGGTACTTTGTTCCTGAGCGAGCGTTAGTCACGCTACTGGAGGCTGGTACTTTGTTCCTGAGCGTTGGTCACGCTACTGGGGGCTGGTACTTTGTTCCTGAGCCGTTGGTCACGCTACTGGAGGCTGATACTTTGTTCCCGAGTGTTGGTCACGCTACTGGGGGCTTGTACTTGTTCCTGAGTGTTGGTCACACTACTGGGGGCTGGTACTTTGTTCCCGAGTGTTGGATCACGCTACTGGGCGCTGGTACTTTGTTCTTGAGTTGTTGGTCACACTACTGGGGGCTGGTACTTTGTTCCCGAGCGTTGGTCACGATACTGGGGGCTGGTACTTTGTTCCTGAGTGTTGGTCACGTTACTGGGGGTTGGTACTTTGTTCCCGAGTGTTGGTCACGCTACTGGGGGCTGGTACTTTGTTCCCGAGCGTTGGTCACGATACTGGGTGCTGATACTTTGTTCCTGAGTGTTGGTCACGTTACTGGGCGCTGGTACTTTGTTCCCGAGTGTTGGTCACGCTATTGGGCGCTGATACTTTGTTCCCGAGTGTTGGTCACACTACTGGGGGCTGGTACTTTGTTCCTGAGTGTTGGTCACGATACTGGGGGCTGGTACTTTGTTCCTGAGTGTTGGTCACGTTACTGGGGGTTGGTACTTTGTTCCCGAGTGTTGGTCACGCTACTGGGGGCTGGTACTTTGTTCCCGAGCGTTGGTCACGATACTGGGTGCTGA
- Protein Sequence
- MMFPCSFCDNVYTRPEYLGRHNCRRSKMSKAKSRRKRPVEFIFNESEPSNSVIRPDRFSCSVCGKMFVRRYHLTAHEKYHSNVKPFECTMCDSKFHRKTDLTVHSRIHSGEKPFECTICGARFNQNSILTTHVRIHTGEKPFGCTVCGEKFRKSSYLKRHFMNHTGERPHVCSVCGAKFRLKSVFTAHFRIHTGEKPFACTFCDSRFKQNSDLKAHIRTHTGEKPYACTVCPARFSQSSALKSHVRIHTGERPYCCNVCSLKFRAKSDLKRHSFTHVADKPFNCGDCGAKFNQLAHLRNHTRRHTGEKPFSCPLCGKKFGRSSTLAKHKASHKEIRYNCLECPEKFKTLVTNTLFLSVGHTTGGWYFVPERALVTLLEAGTLFLSVGHATGGWYFVPEPLVTLLEADTLFPSVGHATGGLYLFLSVGHTTGGWYFVPECWITLLGAGTLFLSCWSHYWGLVLCSRALVTILGAGTLFLSVGHVTGGWYFVPECWSRYWGLVLCSRALVTILGADTLFLSVGHVTGRWYFVPECWSRYWALILCSRVLVTLLGAGTLFLSVGHDTGGWYFVPECWSRYWGLVLCSRVLVTLLGAGTLFPSVGHDTGC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01447791;
- 90% Identity
- iTF_01447791;
- 80% Identity
- iTF_01447791;