Tgen013089.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema genevievae
Gene Symbol
-
Assembly
GCA_902155825.1
Location
CABFWO010000750.1:65863-73107[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00095 0.18 14.3 0.3 1 23 278 300 278 300 0.95
2 12 4.3e-05 0.008 18.5 1.7 1 23 308 330 308 330 0.99
3 12 0.0001 0.019 17.3 0.2 2 23 338 359 337 359 0.97
4 12 5e-05 0.0094 18.3 2.9 1 23 365 387 365 387 0.99
5 12 1.2e-05 0.0023 20.2 0.5 1 23 394 416 394 416 0.98
6 12 5e-05 0.0094 18.3 0.0 1 23 422 444 422 444 0.94
7 12 4e-05 0.0075 18.6 0.3 1 23 450 472 450 472 0.98
8 12 3.3e-06 0.00062 22.0 0.5 1 21 478 498 478 499 0.96
9 12 7.3e-05 0.014 17.8 0.5 1 23 517 540 517 540 0.95
10 12 1.5e-05 0.0028 20.0 2.4 1 23 546 568 546 568 0.99
11 12 0.00018 0.033 16.6 0.4 1 23 574 596 574 596 0.94
12 12 0.002 0.38 13.2 0.1 1 23 602 626 602 626 0.92

Sequence Information

Coding Sequence
ATGACCGCAGATACAGATAAAGAACAGACTCAAAATCCAAAGAATAACACATATTGTTTATTATGCAACAGTCGAGTTGGGGTGTCCTCCCGTAACAGCTTGGAAATCTTTCAAAATACATACGTTACCTCATCTGAGAGGCCAGTTGCGTCTTCAATCGGTGCATTCTTAGAGCATGAGATCACAGAGGATACAGTTCATAGTAATGTGATTTGCAAGAAATGTTATAAACTCTTAAATGAAGCAGACGAGATTGAAGTTCGTTTGGCAGATATCAAGCTGGAAGTGCAGGAGAATTATAAGCGTACCCTAGTGTTACAAATGGAGGGTGATAAAAGTGCCACTGAAGGAGGAGAGGAGCATGAAAAACTGCCTCTAAGCTCAGAAGATGGCAATGTAAGACCTCCTCGGCGTAGGGGGAGGCCTCGGAAGCATGAGTCCCACAATAGTGAAGAAGAGTATGAACAAAAGgAAAATGCTATCATGGTTGCAGCAGAAATGGTAGAGCAGGTTGGCAGcgatgatgaaataaatatagagatGCTGGCAGCCGAAGCGGCCGGTGAAGATCTAGAAGCAGAGGGTGAACTCCATGTAAAGATAAAGTTGGAACCTGGCGAGATTGGCCATATGAAAGACTACATGGGTCGCAGGCGTAATATGATGAAAAGAAAATCCAGACTCTCTATGCATCAGGATGACATCCCTGATCAAGTGATCATGCGTGAAGGTAATGAGTTTGCTTGCCTGCTTTGTACTGGCAGTGAAAAGGTAATTGGTGACATGAAGGGCATCAGCACCCATATGAAAACCACACATAATACTCGCATCTACATTTGCGACATGTGTGGGCAAGACTTCAGGAAACGAAATGAACTGTCGATGCACTTGGATGAGCATGTGGCTGCAGAAGAGGGAGACTTCCAGTGTGAAGTCTGTAACAGGATCTTTACGAACTTGCGTCTCTTCCGTGTGCACAAGCGTATGCATTACCCACAGGCGAAGCTATGGACATGTGAGACATGTGGTAAGCGCTATAGCTCACGTAACCTGCTAGATGAGCACATCAATGTACATCTTGGCGTGCGCCCTTACAAATGTCGGTCCTGTGGCAAGGACTTTGCCTCTAAGTACACCTATAAAGCACACACCAAAACTCATGAAGAGCGCCCACGCCCTTTCTCTTGTGGTGACTGTGGGAAGACATTCCTAAGTGCCCAAAACTTGCAGCAGCACGAGCGCACACATAATGGCCTGAGGAACTATGTGTGTGATCAATGTGGAAAGGCATTTGGTACGGCTCGCAATCTTGAAGTGCACAGTGTGGTCCATTCTGGATATAAACCTTTCATTTGCagGACATGTGGCAAAGCATTTGCGCGCAAGGCAGAGATTCGTGATCATGAGCGCACACACACTGGAGAAAAGCCTTATCAGTGTGAGTTTTGTGGTGCCACGTTCAGTCAGCGCAGCAACCTCCAGTCCCACAAGCGTGCCATGTTTGCCACACACCTGGAAAgatatttttgGATTAATACgGACAAGCGCTATAAGTGCTTAGACTGCGGTAAAGGTTTCAAGAGAAGACGGCTGTTGGACTACCATGTGAAAGCTGCACACACAGGGGAGCGACCATACAAATGCTCTATCTGTGAGGCAACCTTTGTATATCCTGAGCACTTTAAGAAGCACCGACGTATCCATACCGGAGAAAAACCTTTTCTCTGTGAAGTTTGTGGCAAGGCATTTAACTCCCGAGACAATCGAAACGCACATCGGTTTGTGCACTCGGACAAGAAACCGTATGAGTGTTTGGTGTGCGGGGCCGGGTTCATGCGGAAACCGCTGCTTTACAACCACATGCAAAGTCAAGGGCACCTTAACGACACGATCGTCGTAAACCAACCGCGTCTCACCAATGAAGAAGATCTTGTGAATATAGCAGTGGAAGCTGGAGACATGGAAATGACAATTGTAGATGCGACAGATCAAACGGATCAGGATGCCAAGCTATATATCCACGAGCTGAAAGATCATGTCATCATACAGGAAGGAGATGAACATATGTATGCAGAGAAGACTGTAGTGGTCGGAGGAGATGATGGGGAAGACGAAGTTCATCAATTGGATCAAGACAATGTGCAGCACCTCATTATTGATGGATCAGTACACTTTGCTGATGCCAGCGAACTAGCTAATCTGCACGGTGAGGTGGCCGAGATAACTACCACCGCTGGTGGGCAGTACACCAAGAGAATTGTTGTCCCAGCAGTGCCGGCTGTTCAGCATAACATGGAAGAGGGCTCATATGAAGATCAAGAGAATCAGGAAGGGGAGTCCATCATGACTCTAACCCCTTCTCAATCTATTGAAACACCAGATGGTCATGTACGGCTAGTGCATATCAGAATACCATCTGGACAAGGTGATGCACGGACTTGGTATAATGCTGTTGAAAGTTCAGAATAG
Protein Sequence
MTADTDKEQTQNPKNNTYCLLCNSRVGVSSRNSLEIFQNTYVTSSERPVASSIGAFLEHEITEDTVHSNVICKKCYKLLNEADEIEVRLADIKLEVQENYKRTLVLQMEGDKSATEGGEEHEKLPLSSEDGNVRPPRRRGRPRKHESHNSEEEYEQKENAIMVAAEMVEQVGSDDEINIEMLAAEAAGEDLEAEGELHVKIKLEPGEIGHMKDYMGRRRNMMKRKSRLSMHQDDIPDQVIMREGNEFACLLCTGSEKVIGDMKGISTHMKTTHNTRIYICDMCGQDFRKRNELSMHLDEHVAAEEGDFQCEVCNRIFTNLRLFRVHKRMHYPQAKLWTCETCGKRYSSRNLLDEHINVHLGVRPYKCRSCGKDFASKYTYKAHTKTHEERPRPFSCGDCGKTFLSAQNLQQHERTHNGLRNYVCDQCGKAFGTARNLEVHSVVHSGYKPFICRTCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRAMFATHLERYFWINTDKRYKCLDCGKGFKRRRLLDYHVKAAHTGERPYKCSICEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYNHMQSQGHLNDTIVVNQPRLTNEEDLVNIAVEAGDMEMTIVDATDQTDQDAKLYIHELKDHVIIQEGDEHMYAEKTVVVGGDDGEDEVHQLDQDNVQHLIIDGSVHFADASELANLHGEVAEITTTAGGQYTKRIVVPAVPAVQHNMEEGSYEDQENQEGESIMTLTPSQSIETPDGHVRLVHIRIPSGQGDARTWYNAVESSE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01450817; iTF_01448807; iTF_01445859; iTF_01449896; iTF_01446833; iTF_01445014;
90% Identity
iTF_01450817;
80% Identity
-