Tcri003801.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema cristinae
Gene Symbol
-
Assembly
GCA_002928295.1
Location
CM009473.1:15201078-15207760[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00082 0.12 14.3 0.3 1 23 278 300 278 300 0.95
2 12 3.7e-05 0.0054 18.5 1.7 1 23 308 330 308 330 0.99
3 12 8.9e-05 0.013 17.3 0.2 2 23 338 359 337 359 0.97
4 12 4.3e-05 0.0063 18.3 2.9 1 23 365 387 365 387 0.99
5 12 1.1e-05 0.0016 20.2 0.5 1 23 394 416 394 416 0.98
6 12 4.3e-05 0.0063 18.3 0.0 1 23 422 444 422 444 0.94
7 12 3.4e-05 0.005 18.6 0.3 1 23 450 472 450 472 0.98
8 12 9.9e-07 0.00014 23.5 1.2 1 23 478 501 478 501 0.96
9 12 6.2e-05 0.0091 17.8 0.5 1 23 507 530 507 530 0.95
10 12 1.3e-05 0.0019 20.0 2.4 1 23 536 558 536 558 0.99
11 12 0.00015 0.022 16.6 0.4 1 23 564 586 564 586 0.94
12 12 0.0018 0.26 13.3 0.1 1 23 592 616 592 616 0.92

Sequence Information

Coding Sequence
ATGACCGCAGATACAGATAAAGAACAGACTCCAAATTCAAAGAATAAcacatattgtttattatgcAACAGTCGAGTTGGGGTGTCGTCCCGTAACAGCTTGGAAATCTTTCAAAATACCTACGTTACCTCATCTGAGAGGCCAGTTGCTTCTTCAATCGGTGCATTCTTAGAGCACGAGATCACCGAGGATACAGTTCATAGTAATGTGATTTGCAAGAAATGTTATAAACTCTTAAATGAAGCAGATGAGATAGAAGTTCGTTTGGCAGATATCAAGCTGGAAGTGCAGGAGAATTATAAGCGTACCCTAGTGTTACAAATGGAGGGTGATAAAAGTGCCACTGAAGGCGGAGAGGAGCATGAAAAACTTCCTCTAAGCTCAGAAGATGGCAATGTAAGAACTCCTCGGCGTAGGGGTAGGCCTCGGAAGCACGAGTCCCACAATAGTGAAGAAGAGTATGAACAAAAGGAAAATGCTATCATGGTTGCAGCAGAAATGGCAGAGCAGGTTGGCAGcgatgatgaaataaatatagagatGTTGGCAGCCGAAGCGGCCGGTGAAGATCTAGAAGCAGAGGGTGAACTCCATGTAAAGATAAAGCTGGAACCTGGCGAGATCGGCCATATGAAAGACTACATGGGTCGCAGGCGTAATATGATGAAAAGAAAATCCAGACTTTCTCTGCATCAGGATGACATCCCTGATCAAGTGATCATGCGTGAGGGTAATGAGTTTGCTTGTCTACTTTGTACTGGCAGTGAAAAGGTAATTGGTGATATGAAGGGCATCAGCACCCATATGAAAACCACACATAATACTCGCATCTACATTTGTGACATGTGTGGGCAAGACTTCAGGAAACGCAATGAACTGTCGATGCACTTGGATGAGCATGTGGCTGCAGAAGAAGGAGACTTCCAGTGTGAAGTCTGTAACAGGATCTTTACAAACTTGCGTCTCTTCCGTGTGCACAAGCGTATGCATTATCCACAGGCCAAGCTATGGACATGTGAGACATGTGGTAAACGCTATAGCTCACGTAACCTGCTAGATGAGCACATCAATGTACACCTTGGTGTGCGTCCTTACAAATGTCGGTCCTGTGGTAAGGACTTTGCCTCTAAGTACACCTATAAAGCACACACCAAAACTCATGAAGAGCGCCCACGCCCTTTCTCTTGTGGCGACTGTGGGAAGACATTCCTAAGTGCCCAAAACTTGCAACAGCATGAGCGCACACATAATGGCCTGAGGAACTATGTGTGTGATCAATGTGGAAAGGCATTTGGTACGGCTCGCAATCTTGAAGTGCACAGTGTGGTCCATTCTGGATACAAACCCTTCATTTGCAGGACATGTGGTAAAGCATTTGCGCGCAAGGCAGAGATTCGTGATCATGAGCGCACACACACTGGAGAAAAACCTTATCAGTGTGAGTTTTGTGGCGCCACATTCAGTCAGCGCAGCAACCTCCAGTCCCACAAGCGCGCCACCCACTACCAGGACAAGCGCTACAAGTGCTTAGACTGCGGTAAAGGTTTTAAGAGAAGACGGCTGTTGGACTACCATGTGAAAGCTGCACACACAGGGGAGCGGCCATACAAATGCTCTATCTGTGAAGCAACCTTTGTATATCCTGAGCACTTTAAGAAGCACCGACGTATCCATACCGGAGAAAAACCTTTTCTCTGTGAAGTTTGTGGCAAGGCATTTAACTCCCGAGACAATCGAAACGCACATCGGTTTGTGCACTCGGACAAGAAACCATATGAGTGTCTGGTGTGCGGGGCCGGGTTCATGCGGAAACCGCTGCTTTACAACCACATGCAAAGTCAAGGCCATCTTAACGACACGATCGTCGTAAACCAACCGCGTCTCACCAATGAAGAGGATCTTGTTAATATAGCAGTGGAAGCTGGAGACATGGAAATGACTATTGTAGATGCGACAGATCAGACAGATCAGGATGCCAAGCTGTACATTCACGAGCTGAAAGATCATGTGATTATACAGGAAGGAGATGAGCATATGTATGCTGAGAAGACTGTAGTGGTTGGAGGAGATGATGGTGAAGACGAAGTTCATCAATTGGATCAAGACAATGTACAGCATCTCATTATTGATGGATCTGTACACTTTGCTGATGCTAGCGAACTAGCTAATCTGCACGGGGAGGTGGCCGAGATAACTACCACTGCTGGTGGGCAGTACACCAAGAGAATTGTTGTCCCAGCAGTGCCGGCTGTTCAGCATAACATGGAAGAGGGCTCATATGAAGATCAAGAGAATCAGGAAGGGGAGTCTATCATGACTCTGACCCCTTCGCAATCTATTGAAACACCAGATGGTCATGTACGGCTAGTGCATATCAGAATACCATCTGGACAAGGTGATGCACGGACTTGGTATAATGCTGTTGAAAGTTCAGAATAG
Protein Sequence
MTADTDKEQTPNSKNNTYCLLCNSRVGVSSRNSLEIFQNTYVTSSERPVASSIGAFLEHEITEDTVHSNVICKKCYKLLNEADEIEVRLADIKLEVQENYKRTLVLQMEGDKSATEGGEEHEKLPLSSEDGNVRTPRRRGRPRKHESHNSEEEYEQKENAIMVAAEMAEQVGSDDEINIEMLAAEAAGEDLEAEGELHVKIKLEPGEIGHMKDYMGRRRNMMKRKSRLSLHQDDIPDQVIMREGNEFACLLCTGSEKVIGDMKGISTHMKTTHNTRIYICDMCGQDFRKRNELSMHLDEHVAAEEGDFQCEVCNRIFTNLRLFRVHKRMHYPQAKLWTCETCGKRYSSRNLLDEHINVHLGVRPYKCRSCGKDFASKYTYKAHTKTHEERPRPFSCGDCGKTFLSAQNLQQHERTHNGLRNYVCDQCGKAFGTARNLEVHSVVHSGYKPFICRTCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYQDKRYKCLDCGKGFKRRRLLDYHVKAAHTGERPYKCSICEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYNHMQSQGHLNDTIVVNQPRLTNEEDLVNIAVEAGDMEMTIVDATDQTDQDAKLYIHELKDHVIIQEGDEHMYAEKTVVVGGDDGEDEVHQLDQDNVQHLIIDGSVHFADASELANLHGEVAEITTTAGGQYTKRIVVPAVPAVQHNMEEGSYEDQENQEGESIMTLTPSQSIETPDGHVRLVHIRIPSGQGDARTWYNAVESSE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01447775;
90% Identity
iTF_01450817;
80% Identity
-