Basic Information

Insect: Timema genevievae
Gene Symbol: -
Assembly: GCA_902155825.1
Location: CABFWO010002107.1:95636-99880[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00014 0.026 16.9 4.3 1 23 10 32 10 32 0.97

2 20 8e-05 0.015 17.7 0.5 1 23 38 60 38 60 0.98

3 20 9.9e-08 1.9e-05 26.8 1.2 1 23 66 88 66 88 0.98

4 20 2.4e-05 0.0044 19.3 5.2 1 23 93 115 93 115 0.98

5 20 7.5e-06 0.0014 20.9 0.6 1 23 124 146 124 146 0.98

6 20 2.7e-06 0.00051 22.3 1.1 1 23 152 174 152 174 0.98

7 20 1.8e-06 0.00034 22.8 0.8 1 23 180 202 180 202 0.98

8 20 1.9e-07 3.5e-05 25.9 3.7 1 23 208 230 208 230 0.98

9 20 0.00017 0.032 16.7 1.6 1 21 236 256 236 258 0.95

10 20 3.9e-05 0.0073 18.7 2.1 2 23 301 322 300 322 0.96

11 20 0.0033 0.62 12.6 6.9 1 23 328 350 328 350 0.98

12 20 0.076 14 8.3 3.4 1 23 356 378 356 378 0.96

13 20 0.0011 0.21 14.1 1.9 1 23 385 407 385 407 0.97

14 20 3.1e-06 0.00058 22.1 0.7 1 23 413 435 413 435 0.98

15 20 2.6e-06 0.00049 22.4 1.4 1 23 440 462 440 462 0.98

16 20 0.011 2.1 10.9 1.9 1 20 469 488 469 490 0.92

17 20 1.2e-06 0.00023 23.4 0.3 1 23 497 519 497 519 0.98

18 20 2.2e-05 0.0041 19.4 1.3 1 23 525 547 525 547 0.98

19 20 1.3e-06 0.00024 23.3 2.8 1 23 553 575 553 575 0.97

20 20 0.00013 0.025 17.0 2.9 3 23 583 603 581 603 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00014	0.026	16.9	4.3	1	23	10	32	10	32	0.97
2	20	8e-05	0.015	17.7	0.5	1	23	38	60	38	60	0.98
3	20	9.9e-08	1.9e-05	26.8	1.2	1	23	66	88	66	88	0.98
4	20	2.4e-05	0.0044	19.3	5.2	1	23	93	115	93	115	0.98
5	20	7.5e-06	0.0014	20.9	0.6	1	23	124	146	124	146	0.98
6	20	2.7e-06	0.00051	22.3	1.1	1	23	152	174	152	174	0.98
7	20	1.8e-06	0.00034	22.8	0.8	1	23	180	202	180	202	0.98
8	20	1.9e-07	3.5e-05	25.9	3.7	1	23	208	230	208	230	0.98
9	20	0.00017	0.032	16.7	1.6	1	21	236	256	236	258	0.95
10	20	3.9e-05	0.0073	18.7	2.1	2	23	301	322	300	322	0.96
11	20	0.0033	0.62	12.6	6.9	1	23	328	350	328	350	0.98
12	20	0.076	14	8.3	3.4	1	23	356	378	356	378	0.96
13	20	0.0011	0.21	14.1	1.9	1	23	385	407	385	407	0.97
14	20	3.1e-06	0.00058	22.1	0.7	1	23	413	435	413	435	0.98
15	20	2.6e-06	0.00049	22.4	1.4	1	23	440	462	440	462	0.98
16	20	0.011	2.1	10.9	1.9	1	20	469	488	469	490	0.92
17	20	1.2e-06	0.00023	23.4	0.3	1	23	497	519	497	519	0.98
18	20	2.2e-05	0.0041	19.4	1.3	1	23	525	547	525	547	0.98
19	20	1.3e-06	0.00024	23.3	2.8	1	23	553	575	553	575	0.97
20	20	0.00013	0.025	17.0	2.9	3	23	583	603	581	603	0.98

Sequence Information

Coding Sequence: ATGGCGAGTCACACGACAGATAGGCCCTTTCCTTGCGACCTCTGCCGGAAGACTTTCAAACGCAAACATGAACTCGTTAGCCACAAGAAGCAACATGAAGGTGTCAAAGATTTTGTATGTGACATTTGCAGCTACGCGACAAGCCATAAAGCCTCACTTGCCGTGCACATTAAGAGACATACGTGCGAAGCTCAATTCCCCTGCAACGTCTGCAACCGAAGTTTCTACACAAATTCTCAACTTCAGAACCATATAAACACTCACTACGGAAAGAAGCATCAGTGCGAGTTTTGCGGCAAGTCGTTCATCCACAAGTACAACATGTTGATCCATCAGAAATCCCACGACCCATCGAGAGACGTAAGGAAATTCCCATGCGAGATTTGCGGAAAAACTTATCAGCGCAGAAACAAACTCATGATGCACATTCGTCTGCACATGGGAGAGATGCGCTACATATGCGACATATGTGGGAAATGTGTGACGAGCAGTACGTCCTTGGAGACTCACCGAAGGGTCCACACCGGTGAGAAGCCGTTCGTCTGCGACCTTTGCGGGAAAGCGTTCAACTCGAACAACTACCTGCGGGTCCACAAGCGCTCGCACACCGGAGAAAAACCTCACACGTGTAAACAGTGCGGGAAATCGTTCACTCAGCGCTCCACGCTTGTTGTACATATGAGGTACCATACTGGTCAGAGGCCGTACGAGTGTCTCATGTGTGACAAGCGATTTGTTACCAGGACCTTGTTGAATATTCATCAGAAATGTCATGAgtGTTCACCACAATATGGTGGTGAGTGGTGGAATGAAGGTTTGTGTACATCTCCCGAGTCTCCGAGAGCCATAAAGGGGGGACCCCCGCTCTTAAAAGGTCCGAAAAAACAACCCGAAACCTTGGAATGCGACACTTGTGGGAAGAGGTGTAAGAGTAAAGCCAACCTTAACTTACACTCAAGAGTTCACGACCCTTCGAAACATCACAAGTGTAAAACTTGCGATAAAATATTTCTGGATAAGCACCATCTCGCAAGGCACACGGCGACCCACAACAAAGAGAGATCGTACGCATGCGACATCTGCGACAAAACTTACAAGTGTCCTTTCAGGCTATCAAGTCATAAGAAAAGTCACTGCGAGAAGAAAAAGACACACGTGTGCGATATCTGCGACTACTCGACAATCTACAGGTACTATCTGGAAATCCACAAAAAAAGGCATGCGTCTGATTTTACGTTCAAGTGTGATCTGTGCGGGAAAGGTTATTACACCGCTACGGATCTTAAAAGGCATAGAATGATCCATGGTGGGAGTAAACACACATGCGACGTATGCGGCAAAGAGTTTACGATGGATAAAAACCTGAAAGACCATATGAGGATCCATAAATCCAACAGAAGACGTTTCAACTGCGCACTTTGCggtaaaagctatttttatactAGCCAATTGAATGTGCACAACTGCACCAAAGGAGAGGCTGTCAGATACGTCTGCGATGTTTGCGGAAAAACCTTGACGAGTGCGTCGTCCCTTCAGAGCCACCGCCGGCTACACACAGGGGAGAAGCCGTTCATGTGTGATATCTGTCTGAAGTCCTTCAACACGGCCACTTACTTGCGCATACACAAGCGCTCACACACGGGAGAGAAGCCCCACGTGTGCAGTCAGTGTGGCAAGTCTTTCACCCAGCGCTCGACGCTTGTCGTTCACTACAGGTACCATTCGGGGGAGCGTCCTTTTGGGTGCCATGTTTGCTCAAAACGATTTGTCACAAGGACCCTTCTTAACACTCACATTAAGAATCATAAATGA
Protein Sequence: MASHTTDRPFPCDLCRKTFKRKHELVSHKKQHEGVKDFVCDICSYATSHKASLAVHIKRHTCEAQFPCNVCNRSFYTNSQLQNHINTHYGKKHQCEFCGKSFIHKYNMLIHQKSHDPSRDVRKFPCEICGKTYQRRNKLMMHIRLHMGEMRYICDICGKCVTSSTSLETHRRVHTGEKPFVCDLCGKAFNSNNYLRVHKRSHTGEKPHTCKQCGKSFTQRSTLVVHMRYHTGQRPYECLMCDKRFVTRTLLNIHQKCHECSPQYGGEWWNEGLCTSPESPRAIKGGPPLLKGPKKQPETLECDTCGKRCKSKANLNLHSRVHDPSKHHKCKTCDKIFLDKHHLARHTATHNKERSYACDICDKTYKCPFRLSSHKKSHCEKKKTHVCDICDYSTIYRYYLEIHKKRHASDFTFKCDLCGKGYYTATDLKRHRMIHGGSKHTCDVCGKEFTMDKNLKDHMRIHKSNRRRFNCALCGKSYFYTSQLNVHNCTKGEAVRYVCDVCGKTLTSASSLQSHRRLHTGEKPFMCDICLKSFNTATYLRIHKRSHTGEKPHVCSQCGKSFTQRSTLVVHYRYHSGERPFGCHVCSKRFVTRTLLNTHIKNHK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01445841;
90% Identity: iTF_01445841;
80% Identity: -