Tgen041451.2
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_902155825.1
- Location
- CABFWO010004876.1:19171-40633[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1 2.6e+04 -3.8 2.2 276 281 325 330 260 400 0.60 2 3 4.7e-113 1.2e-108 365.0 28.9 1 300 560 866 560 866 0.90 3 3 0.036 9e+02 0.9 5.3 120 171 864 915 863 936 0.89
Sequence Information
- Coding Sequence
- ATGGAAGATGCCGACGAATGTTGCTTCTACGACGCCGTCAGTGAGATACCCCTGAGCAAGCCGAGGATGGGCAACACCGCCGGTGCGGAGGGCACCAAAGGGGGCGGACGCCCAGGTCTCACCGACGAGTTCCCCATAGTTCCGGTGATTGACCCGCGACAAGACGACAGTGAAGAAGACGACACCTCAATGATAAATCAGATCTGGACGAAATCCGTAGTCGAGGAAAAGATTGTACGCAACCTTCGTAAGGATGTGCTGGCCACGCCCCCCAAGGATGAGGAGCCTGACGGTGAAGTCTCAGACGTGAGTTCCTCGGCCCTTGGAAACATCCCGCAGTCAAGTCCTGGCAGTGGCAAGTCCTCTGTATCCACTGAGGAAGGTGTTGTAGTGTCCAAATACATCGTGAAAACCGTTGAGGACACTCTTTTGGCCGCTGAAAGTGGTTGTGATAGGGCTGACTCCCAGGATAGTAGGAAGTGTCTTGATGAGGCACCCTCTGAAGAAAGTGCTAACCAAGTTGTAGGGTCTGATCCCACAGGAAGTTCTGTGATTGACAATAGTGCTGCAGGAAGTGGATCTAATAAGAAGGTGAACATTGGACATTATATCACAGACATCAGCAAAGAGGAAGAGAGGTTAGTTTCTAAATTAGAGGATGAAAAGGgagaatatattgatataattccAAAGAACAAGGATATAGTTGGTGAATTAGGGGATGTAAAGGAGGAAGATGGGAAGAAAAACGATGTGGTCGGTGAATTAGGGGATGTAAGGGAGGAAGCTGGGAAGAAAAATGATGTGGTCGATGAATTAGGGGATGAGGAAGATGGGAAGAAAAACGATGTGGTCGATGAATTAGGGGATGTAAAGGAGGAAGATGGGAAGAAAAATGATGTGGTCAGTGAATTAGGGGATGTAAAGGAGGAAGCTGGGAAGAAAAATGATACAGTCGATGAATTAGGGGATGTAAAGGAGGAAGCTGGGAAGAAAAATGATACAGTCAATGAATTAGGGGATGTAAAGGAGGAAGATGGGAAGAAAAATGATGTGGTCAGTGAATTAGGGGATGTAAAGGAGGAAGATGGGAATAAAAACGATGTGGTCGATGAATTAGGGGATGTAAAGGAGGAAGATGGGAAGAAAAACGATGTGGTCGATGAATTAGGGGATGTAAAGGAGGAAGATGGGAAGAAAAACGATGTGGTCGGTGAATTAGGGGATGTAAAGGAGGAAGATGGGAAGAAAAATGAAGTGGTCGATGAATTAGGGGATGTAAAGGAGGAAGATGGGAAGAAAAACGATGGGGTCGGTGAATTAGGGGATGTAAAGGAGGAAGATGGGAAGAAAAATTATGTGGTTGGTGAAATAAGGGCTGCTAATGATGATAACAGGGGTGTCAAAAGAATAGAAAATGTGCCAGGTCAGTTTTGGGaggaaagcaagactgagaatGAAGACACCGCTGACATCAACGGAATGAAAGAGGATGCAGTTGATAAAGCTGTGAATAGAAACGATGGTGATTATAGTGAAGATAGTGATGGTTATGATCTTGAAAACGATGAAGATATCAATAACAAACACAGAAGTAAAGGGAATATGGTCGATGAAACAGAGAACGAAGAGGATGCCGAGTACCTGAATAATTTTCTCGGGAAAAGCAATGACCAAGCAGAGGCCCGCCTTGCAGCGAGGAGACAGGCAAGGGCAGAGGCCCGGGAGATACGCATGCGGGAACTCGAGAGGCAACAGAAGGAAATTGAGGAGAACACCAACAAGAGTTATGACTCCTTCACCGCAGAGCCAGGAAATAGGACGCCCCGTGTGGCCGCCTCCGTGAACCGCAGCAGCTCGCTGCTCTCTGGTGGGGGTAACAACAGTTACCACTCGAGTCGGCGCAGCTCAGAGGACTCGCTGGAGGAAGGGATCAGCCTCAGGGATGTCAGGCATGAGTTAAAGGAGGTGGAAGATAAGTTCCGAAAGGCGATGATACAGAATGCCCAGTTGGATAACGAGAAGGCATCCCTCACCTACCAGGTGGAACTCCTTAAGGACAGGCTGGAAGATCTGGAGGAGTCCCACTCTCAGTTGCAGCGTGAGAACCGGGACAAGTGTCGAGAACATGATCAGCTCAAGAGAGCGTCCGCCAAGTTGAAGGAAGACATGGAGTGGTACAAGGCGCAGTTGGAAGAGAGGGACAGACTCATTCAGGAGAAGGGCCTTATAATCGTGGGTGACGACCAGCTTTCCAGCGAGGACGAAAGTGTGGGTGAGGACTCACCCAAGAAACCTCCCAAGAGGGCTCTGGTCTCCATCGAGTCGGCGGAGATGTTGGAAACTGCAGGGGAGGGCTCTCTAGACGTACGGCTGAGGAGGTTTGCGGAGGAGCGCAACGAACTGCTGGACCAAGTGAGGCACCTCAAACTTGAATTGGAAGAGGAGCGCAGCAGACACAAGTCCGACGCCAAGAGGATACCTGGGGCCAGCCTCAACGGCCCTGACACAGATTTTGAGGACATTCAGAGGGAGGCCAACAAGCTTCTAGGGGACTACAAGTTCAAGCTGCAGAAAGCGGAGCAGGATGTGTCTACACTGCAGGCCAATGTGGTGCGTCTTGAGAGCCAGGTGATCAGGTACAAGTCTGCCTCGGAGTCCTCGGAGAAGGGCGAGGATGAACTTAAGGTTGAAAAGAGGAAACTTCAGAGAGAGTTACGAGAAGCTCAGTCAAGAGTCGAGGAATTAGAAGTGTCCAATAGCCATCTACAGAGAAGATTGGACAAACTAAAGAATGCCAAATCAGCCCTCTTGAAAGAACTTTGA
- Protein Sequence
- MEDADECCFYDAVSEIPLSKPRMGNTAGAEGTKGGGRPGLTDEFPIVPVIDPRQDDSEEDDTSMINQIWTKSVVEEKIVRNLRKDVLATPPKDEEPDGEVSDVSSSALGNIPQSSPGSGKSSVSTEEGVVVSKYIVKTVEDTLLAAESGCDRADSQDSRKCLDEAPSEESANQVVGSDPTGSSVIDNSAAGSGSNKKVNIGHYITDISKEEERLVSKLEDEKGEYIDIIPKNKDIVGELGDVKEEDGKKNDVVGELGDVREEAGKKNDVVDELGDEEDGKKNDVVDELGDVKEEDGKKNDVVSELGDVKEEAGKKNDTVDELGDVKEEAGKKNDTVNELGDVKEEDGKKNDVVSELGDVKEEDGNKNDVVDELGDVKEEDGKKNDVVDELGDVKEEDGKKNDVVGELGDVKEEDGKKNEVVDELGDVKEEDGKKNDGVGELGDVKEEDGKKNYVVGEIRAANDDNRGVKRIENVPGQFWEESKTENEDTADINGMKEDAVDKAVNRNDGDYSEDSDGYDLENDEDINNKHRSKGNMVDETENEEDAEYLNNFLGKSNDQAEARLAARRQARAEAREIRMRELERQQKEIEENTNKSYDSFTAEPGNRTPRVAASVNRSSSLLSGGGNNSYHSSRRSSEDSLEEGISLRDVRHELKEVEDKFRKAMIQNAQLDNEKASLTYQVELLKDRLEDLEESHSQLQRENRDKCREHDQLKRASAKLKEDMEWYKAQLEERDRLIQEKGLIIVGDDQLSSEDESVGEDSPKKPPKRALVSIESAEMLETAGEGSLDVRLRRFAEERNELLDQVRHLKLELEEERSRHKSDAKRIPGASLNGPDTDFEDIQREANKLLGDYKFKLQKAEQDVSTLQANVVRLESQVIRYKSASESSEKGEDELKVEKRKLQRELREAQSRVEELEVSNSHLQRRLDKLKNAKSALLKEL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -