Tgen020689.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema genevievae
Gene Symbol
PAXBP1
Assembly
GCA_902155825.1
Location
CABFWO010001447.1:85901-124621[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1e-32 2.5e-28 101.5 0.2 2 272 507 720 506 723 0.94

Sequence Information

Coding Sequence
atgtCACTCTTCAATAAACCCAAGAAAAATATTCGTAGGAGAATAGCTGATAATGAAGATGGGGATGAAAATGACGTTAAAATGGAAGTGGAAgatgaacacaatattaaacaagTTCAAGAAAATATAGCTAAtatcaaggaaaagaaaaatagaaaaaaacaaactgtaTTGAGTTTTGAAGAAGAGTTGAACGAAGCAGATGATGGTGaaatttttcaagtgaagaaATCAACACAAAGTAAGAAATTGATGAAAATTTTGGACCgggaaagaaaaaagaaaaaagaggtAAAAATTGAAGATGAAAAAATGGACGTTGTTGAGACTGAGAAGAGGATTATCGATGAAGCATCTGATCTTGTATTGGTTGTGAAAAACACAGAAATGCCAGCGAACACTATTCTAAATGGTCGAGAGGCAGAGATGGCAGATTACAGCTCTGCGGAGGAAGACGAGACAAAACACAAGTTCACACCACAGGATCATGTCAAGTTGTTGCTTGAGAGTGGTCTTATCCCCGATGCAGCAACGATTCACGCAGCAAGAAAACGGCGACAACTTGCGAGGGAAATGGGCGGAAACTTCATTCCTGTAGAAACTTCGAAAAAAAGCGACAAGTCTCGGTTGGTGCGCGAGGATGACCATGACGGTAGTGACGAGGAGGAGAGAGTCAATATGGAGGTCAACATGGATGCTCGCACCAGAGAGGAGAGGCGCGAGGCCTTCATGGCTGCGCAGAATAAAGCTGCTGGCGAGGACAGCGATAAGGGTGAGGAAGATGACTGGGAGTCTCAGCAGATTAGGAAGGGTGTGACTGGAGCACAGCCCGAGCCACTGCACACGATTCACGAAGTTCCCACACTCGGCATGCACTGTTTTGGAGCCGATGATTCGAAGCTGTCCACACCTCAGTCTATAGTTAATAAACTCAAGGAAAGGTTAGTATCACTCAAGGAAGTCCACCATCGGCACACGCAAGACCGAGATCGAGTGGCGGATGATCTGGTGACTCTGAGCGCCGAACGCGAGGACTTGGAGAGCGAGGGTCCTGCTCTAGTGCAGAGGTTCAGATTCTACCAAGAGTTGCGTGGGTATGTCACTGACTTGGTAGAGTGTCTTGACGAGAAGGTGGCTGTTATCCATGCGCTGGAACAACGTATGCTGGCTTTGTTGAAGAAGCGCTCAGACGATTTGATGGAACGCCGTCGTCAGGACGTTCGAGATCAGTCGGAAGAGCTCTCCCCTCTATCTAGATCAGGTGCCACCCCTTCTCAGAGACGTAATCGGGAAGAAGAGGAATCCCGAATTCGACGAGCAGCAGAAAGAGAGGGGCGTCGAACAAGACGAAGAAGAGCGCGGGAGGGGAAGTACACCCCAACTCGCCATGTCGAGGGAATGTCCAGTGACGATGAGATGACGGAACTCGAAGCTGTGGCGTTTAGGACTCAGAAAGATCTCATCGAGTCGGATGCTCGCCTAGTGTTTGAGGACGTTGTAGAGGAGTTCTGCTCAGTTCGCAGCATTGTAAAACGGTTTGAAAGTTGGCGCTTCACTGACTCTGATGCTTACAAGGAAGCTTATGTCAGTCTTTGCCTCCCCAAAGTTCTAGGGCCTATCATTCGACTTAAACTTATCACATGGTCTCCTCTCCAGGAAAGTGTGGAGTTTGAACGCCACAAGTGGTATGACACGCTCCTGTTGTACGGGTTAAAAGAGTCCGAGAATGAAGAGTTGCTAAGACAAGATCCTGACTTGCGGCTGGTGCCGACTATTGTGGAGAAGGTCATACTACCCAAACTCACACaattgGTAGAGGCTCAGTGGGACCCCCTGTCAACCTCTCAATCTCTGAGGTTGGTAGGCCTGACAAACCGGCTGATTCAGGAGTACCCAACGATGTTGCCAACCAGCAAATACCTTGAGAAATTCCTCAGCTCCGTCATCGCCAAGATGAAGAGTTGTGTTGAGAATGATGTTTTTATTCCCATCTACCCTAAGCTGGTGATGGAGTCCAAGGGAGGTGGTATCAATGTGTTCTTCCAGCATCAGTTTGGCAGTGCATTGAAGCTGCTCCGTAACCTCTTGAGTTGGCAGGGACTGGTCAGTGACCGAGTACTGCAGGATGTTGCTTTGGGGTCGGTCCTGAACCGCTACCTCCTGGCAGCACTCAGAACCTGCGAGCCCACTGATGCCGCCAACAAGTGCACTATGattgtGTCAACATTTCCACGAGGATGGCTTCAACAAGAATGTTCGGTTCCACACCTCTCGATGTTTGTGAACCAGATCAAGATTATTGCTCAATGTCTAGATGTGTCCACAGTATTGGGGAGGTAA
Protein Sequence
MSLFNKPKKNIRRRIADNEDGDENDVKMEVEDEHNIKQVQENIANIKEKKNRKKQTVLSFEEELNEADDGEIFQVKKSTQSKKLMKILDRERKKKKEVKIEDEKMDVVETEKRIIDEASDLVLVVKNTEMPANTILNGREAEMADYSSAEEDETKHKFTPQDHVKLLLESGLIPDAATIHAARKRRQLAREMGGNFIPVETSKKSDKSRLVREDDHDGSDEEERVNMEVNMDARTREERREAFMAAQNKAAGEDSDKGEEDDWESQQIRKGVTGAQPEPLHTIHEVPTLGMHCFGADDSKLSTPQSIVNKLKERLVSLKEVHHRHTQDRDRVADDLVTLSAEREDLESEGPALVQRFRFYQELRGYVTDLVECLDEKVAVIHALEQRMLALLKKRSDDLMERRRQDVRDQSEELSPLSRSGATPSQRRNREEEESRIRRAAEREGRRTRRRRAREGKYTPTRHVEGMSSDDEMTELEAVAFRTQKDLIESDARLVFEDVVEEFCSVRSIVKRFESWRFTDSDAYKEAYVSLCLPKVLGPIIRLKLITWSPLQESVEFERHKWYDTLLLYGLKESENEELLRQDPDLRLVPTIVEKVILPKLTQLVEAQWDPLSTSQSLRLVGLTNRLIQEYPTMLPTSKYLEKFLSSVIAKMKSCVENDVFIPIYPKLVMESKGGGINVFFQHQFGSALKLLRNLLSWQGLVSDRVLQDVALGSVLNRYLLAALRTCEPTDAANKCTMIVSTFPRGWLQQECSVPHLSMFVNQIKIIAQCLDVSTVLGR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01449628;
90% Identity
iTF_01450596; iTF_01448570; iTF_01446608;
80% Identity
-