Tgen002854.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010000101.1:62831-66983[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-09 1.7e-06 29.6 0.0 2 39 18 56 17 60 0.91
Sequence Information
- Coding Sequence
- ATGcctaaattaaagaaaaaggaaaaagtaGGCTTACGTGGGAAGTGGCAAGAAGAGAATATGAAAATAGCTGTAGAGAAAGTTTTAAGTAACGCTATGACAGTGAGACAGGCGGCAAATACATACGCTGTTCCTAAAAGCTCCTTAGGAGACAGAGTAGCGAAGTTAAAATTAGGAAATGAAGTAAAAATAGGTCCTGACATGGGGCGATTCAAACCTACTTTCTCAGAAAATTTTGAAGAGGAACTTGTAATACACATTAAAGACCTTGATAACCGTTTGATGCCACTGAGTCGTAAGGAGTTTGGGAAGTTGGCTTTCGATGTGGCCGAAGCCTTGAAACTTGATCACCGCTTCAACAAGGAAAAGAAGTGTGCTGGTAAGGACTTCTACTATGATTTCATGAAACGACACCCTGAAATCACATTAAGAAGCGCTGAATCTACTAGCATGCAACGAGCAGTTGGTTTCAACAAACCTCAGGTTTCTAgattttttgacaaatttaatcaacttcaaaataaatattccttttcTGCATGTAGAATTTTCAATGCAGATGAAACAGGAGTTACGTGCGTTCATTCAAATGACTCTAAAGTTATATCCataaaagggaaaaaacaaGTTGGAAAATTAACGTCTGGGGAAAGAGGTCGTACGGTCACTGTGCTTCTTTGCGTAAATGCTTCTGGAGACCAATTTATCCCACCTCTCTTTATATTTCCTAGGCAGAGGATGAACAACCGCCTCATGATTGGTGCACCCCCTGGAAGTTTGTTTGCAGCTCAAACTAGTGGATGGATAACTGGTGAAATTTTTCTGAAGTGGCTTCAAGAGTTCGTCAAACGTGTCCATCCTACTAAACATGAACCTGTGCTGCTCATTTTAGATGGTCACTGCAGCCACAAGGAGCTTGACGTGATTCTGTTTGCACGTCAACACAATGTTCATATATTAAGTTTGCCCCCCCACACAACGCACAAATTGCAACCACTTGATAGGACCATAATGAAGCCTTTTAAAACCTCATATAATGAAGCTTGTGCTATTTGGATGCAAGAGAATCCTTTTTCCAGGATAACAGATTATGATGTAGTTGGATTAGTAAGCTATGCTTTTACCAAAATTAGCCGAATGGATATAGCTAAAAAAGGGTTTGAATGTACAGGTATACATCCATATAATCCAAACATATTCACAGATTTGGACTATTTGCAATCGCAAGGACTAGATATTCCCGACTCTGTCTATGAAGACATAGAGCTATTGAAAAATTATCCAGGAAATCTACAATCAATATCCCCTAAGACTCCACTCACATCAAATTATGGACACGAAAATTTACAACCAACATTTGAATCTCCAAGAGCCTCAACTTCTGTATCTCCACAACCTCCATTTCCAGAGTTATTTACTTCCATGACTTCACAACAGTTAACTTCAACATCAAAGACTCCACAGTCATCAATTCCTTCAACTGGATTTTTCCACACCATAATCCCACAAGTGTCACCAGTGCCTGTCGCTGCAGAAAAACACGACTCGGCGCAAGCTAATAATAAGGTACTAGTCCTCCTCGGGCATCGTTCTTTGATATGTCGCCAGAGAGAAGCAGCATCTCTGCTCAACTTTGTTATGAGTCGCCTGGGGGCAGCCATGGAGATTGTTACTAATGGAGCAACAGCGACACACGGCGACATGGAGGAAATATACAAGTGA
- Protein Sequence
- MPKLKKKEKVGLRGKWQEENMKIAVEKVLSNAMTVRQAANTYAVPKSSLGDRVAKLKLGNEVKIGPDMGRFKPTFSENFEEELVIHIKDLDNRLMPLSRKEFGKLAFDVAEALKLDHRFNKEKKCAGKDFYYDFMKRHPEITLRSAESTSMQRAVGFNKPQVSRFFDKFNQLQNKYSFSACRIFNADETGVTCVHSNDSKVISIKGKKQVGKLTSGERGRTVTVLLCVNASGDQFIPPLFIFPRQRMNNRLMIGAPPGSLFAAQTSGWITGEIFLKWLQEFVKRVHPTKHEPVLLILDGHCSHKELDVILFARQHNVHILSLPPHTTHKLQPLDRTIMKPFKTSYNEACAIWMQENPFSRITDYDVVGLVSYAFTKISRMDIAKKGFECTGIHPYNPNIFTDLDYLQSQGLDIPDSVYEDIELLKNYPGNLQSISPKTPLTSNYGHENLQPTFESPRASTSVSPQPPFPELFTSMTSQQLTSTSKTPQSSIPSTGFFHTIIPQVSPVPVAAEKHDSAQANNKVLVLLGHRSLICRQREAASLLNFVMSRLGAAMEIVTNGATATHGDMEEIYK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448465;
- 90% Identity
- iTF_01448465; iTF_01448418; iTF_01447459; iTF_01448419; iTF_01449517; iTF_01448463; iTF_01444690;
- 80% Identity
- -