Tgen001244.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010000036.1:82579-109053[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.2e-11 1.5e-08 36.1 0.0 1 38 191 229 191 234 0.90 2 4 6.9e-13 4.9e-10 40.9 0.1 1 39 245 283 245 286 0.95 3 4 4.8e-18 3.4e-15 57.4 0.0 1 45 300 345 300 345 0.97 4 4 4.6e-19 3.3e-16 60.7 0.1 1 43 352 395 352 396 0.97
Sequence Information
- Coding Sequence
- ATGCAGTCTTGCGGGAGTTTTGCtcgctccttgagccaggttgagtacTCGGGTGATGGGGTTTTGGGAAACACAAATGGTAGCACCTCTGGCATTGGCTCTCACCACAGTGGTCTGTCCCAGTCTCCCCATATTGTGCTGGAGGGGACAAATCACAGCTCAAGTAACGCCACAGATGTAGACATACCTCCGGAAGCACAGCCACCTGCACCGTCTGCAACGCTGGTGGAGAATTTAGACATCCATGAGTGCTCAGATCATGACAGGAGAGAACTGACAGatgtCATCCAGTTAACATCAGATGCAGATGGTTCTAGTGTGTCTCAGCGGGAAACTGAAGATGTTAAAGTTAAGTTTGAAACCCTACGTGCCATGGAACAGGCGGAAACTATTGACATAAACAGCCACTTGTCCGACAGAGTAAGTGACCATAATGTAGGTGAGGATGAACATACAATGCACACTATGATGATCACACCAGAATTACTTGGGTTAATTCCTTCATCATCGGGACAATCGGATGTGAGTAGCGACGCAGGCAAATGTGGCATTATGGGCCCCAAGACGTGGACACAGGAGGATATGGAACTTGCCTTGGATGCACTGAGAAACCACAACATGAGTCTTACTAAGGCATCTGCAACTTATGGCATTCCCTCCACGACTTTGTGGCAACGAGCTCACCGCATGGGAATTGACACCCCCAAAAAGGAGGGTCCCACCAAGTCTTGGACAGAAGAAAACCTCAATAGTGCACTGGAGGCACTCAGAACTGGCTCTATATCTGCTAACAAAGCCAGCAAGGCTTATGGTATACCCAGCAGTACCCTGTACAAAATTGCACGTCGTGAAGGAATACGTTTGGCTGCTCCGTTTAATGCTGCGCCTACTACTTGGACTCAGGATGACCTTGAACGAGCTCTAGAAGCTATTCGCTCAGGACAAACATCTGTTCAGCGTGCCTCTACAGAATTTGGGATTCCTACAGGGACATTATACGGCCGTTGCAAACGAGAAGGTATTGAACTTTCTAGGAGTAATCCTACACCATGGTCAGAAGATGCAATGGGTGAAGCATTAGAAGCTGTGAGAGTTGGACAGATGAGCATCAACCAAGCGGCAATTCACTACAATCTTCCGTATTCTTCCTTGTATGGCAGATTTAAAAGGGGCAAGTACGAGGCGGAGGGGCACCAGCATCCGGATGAAACGGGCCACCACTCTCCCCCGACATCGGCACCACAGGTGATGATTGTCCCTTACCAACAACATACACATCTTCCACCCCTTCTAGGCTCATATNCATCTTCCACCCCAGCAACAACCCCCACAGCAGcaaccccctccacccccacaACACCACTCCCCTCAACAACATCCTATGTACCAGCAGCATGCCCCTCACAGCGCAAGTTGAGGGCATGGGCGGCCATCTGTACCATAGAGTATTATCGCAGCGTCTGCTCTGGTCCGAATACAAGAATAGTTCAATGA
- Protein Sequence
- MQSCGSFARSLSQVEYSGDGVLGNTNGSTSGIGSHHSGLSQSPHIVLEGTNHSSSNATDVDIPPEAQPPAPSATLVENLDIHECSDHDRRELTDVIQLTSDADGSSVSQRETEDVKVKFETLRAMEQAETIDINSHLSDRVSDHNVGEDEHTMHTMMITPELLGLIPSSSGQSDVSSDAGKCGIMGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGPTKSWTEENLNSALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQDDLERALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHQHPDETGHHSPPTSAPQVMIVPYQQHTHLPPLLGSYXSSTPATTPTAATPSTPTTPLPSTTSYVPAACPSQRKLRAWAAICTIEYYRSVCSGPNTRIVQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01444621;
- 90% Identity
- iTF_01444621;
- 80% Identity
- -