Tbar000718.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010000018.1:760710-792055[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.6e-11 2e-08 36.0 0.0 1 38 170 208 170 213 0.90 2 4 8.3e-13 6.4e-10 40.8 0.1 1 39 224 262 224 265 0.95 3 4 5.8e-18 4.5e-15 57.3 0.0 1 45 279 324 279 324 0.97 4 4 5.6e-19 4.3e-16 60.5 0.1 1 43 331 374 331 375 0.97
Sequence Information
- Coding Sequence
- ATGCCTGTTGAGTTGGGAAACACAAATGGTAGCACCTCTGGCATTGGCTCTCACCACAGTGGTTTGTCCCAGTCTCCCCATATTGTGCTGGAGGGGACAAATCACAGCTCAAGTAACGCCACAGATGTAGACATACCTCCGGAAGCACAGCCACCTGCACCGTCTGCAACGCTGGTGGAGAATCTAGACATCCATGAGTGCTCAGATCATGACAGGAGAGAACTGACAGATGTCATCCAGTTAACATCAGATGCAGATGGTTCTAGTGTGTCTCAGCGGGAAACTGAAGATGTTAAAGTTAAGTTTGAAACCCTACGTGCCATGGAACAGGCGGAAACTATTGACATAAACAGCCACTTGTCCGACAGAAATGTAGGTGAGGATGAACATACAATGCACACTATGATGATCACACCAGAATTACTTGGGTTAATTCCTTCATCATCGGGACAATCGGATGTGAGTAGCGACGCAGGCAAATGTGGCATTATGGGCCCCAAGACGTGGACACAGGAGGATATGGAACTTGCCTTGGATGCACTGAGAAACCACAACATGAGTCTTACTAAGGCATCTGCAACTTATGGCATTCCTTCCACGACTTTGTGGCAACGAGCTCACCGCATGGGAATTGACACCCCCAAAAAGGAGGGTCCCACTAAGTCTTGGACAGAGGAAAACCTCAATAGTGCACTGGAGGCACTCAGAACTGGCTCTATATCTGCTAACAAAGCCAGCAAAGCTTATGGTATACCCAGCAGTACGCTGTACAAAATTGCGCGTCGTGAAGGAATACGTTTGGCTGCTCCGTTTAATGCTGCGCCTACTACTTGGACTCAGGATGACCTTGAACGAGCTCTAGAAGCTATTCGCTCAGGACAAACATCTGTTCAGCGTGCCTCTACAGAATTTGGGATTCCTACAGGGACATTATACGGCCGTTGCAAACGAGAAGGTATTGAACTTTCTAGGAGTAATCCTACACCATGGTCAGAAGATGCAATGGGTGAAGCATTAGAAGCTGTGAGAGTTGGACAGATGAGCATCAACCAAGCGGCAATTCACTACAATCTTCCGTATTCTTCCTTGTATGGCAGATTTAAAAGGGGCAAGTACGAGGCGGAGGGGCACCAGCATCCGGATGAAACGGGCCACCACTCTCCCCCGACATCGGCACCACAGGTGATGATTGTCCCTTACCAACAACATACACATCTTCCACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCCCAGCAACAACCCCCACAGCAGCaaccccctccacccccacaACACCACTCCCCTCAACAACATCCTATGTACCAGCAGCATGCCCCTCACAGCGCAAGTTGAGGGCATGGGCGGCCATCTGTACCATAGAGTATTATCGCAGCGTCTGCTCTGGTCCGAATACAAGAATAGTTCAATGACAATTCAGGTACTAGCATTAACGTACCACCTTAAGCCCATAGCCTACCAGTTCTCTCTCACATCTATACCATACACCAGTAAGGGAGACCCGCGGGCAGCAAAGGCAACCCAAGCCAACGTCGTTCCCGCAAAACAAGCCCCTGGGGTCATCAGGAAACTAGCGGAGCTCTTCTAG
- Protein Sequence
- MPVELGNTNGSTSGIGSHHSGLSQSPHIVLEGTNHSSSNATDVDIPPEAQPPAPSATLVENLDIHECSDHDRRELTDVIQLTSDADGSSVSQRETEDVKVKFETLRAMEQAETIDINSHLSDRNVGEDEHTMHTMMITPELLGLIPSSSGQSDVSSDAGKCGIMGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGPTKSWTEENLNSALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQDDLERALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHQHPDETGHHSPPTSAPQVMIVPYQQHTHLPPXXXXXXXXXXXXXXXXXHPSNNPHSSNPLHPHNTTPLNNILCTSSMPLTAQVEGMGGHLYHRVLSQRLLWSEYKNSSMTIQVLALTYHLKPIAYQFSLTSIPYTSKGDPRAAKATQANVVPAKQAPGVIRKLAELF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01447410;
- 90% Identity
- iTF_01447410;
- 80% Identity
- -