Tdou002548.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- stc
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010000103.1:226297-244403[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.6e-05 0.8 12.1 15.6 4 19 26 41 25 41 0.97 2 11 0.94 2.9e+04 -2.5 2.0 5 10 70 75 70 75 0.93 3 11 0.00036 11 8.4 8.1 1 11 81 91 81 92 0.97 4 11 0.91 2.8e+04 -2.4 0.3 4 10 96 102 95 102 0.84 5 11 9e-09 0.00028 23.1 16.1 1 19 108 126 108 126 0.98 6 11 0.8 2.5e+04 -2.3 0.7 6 10 155 159 154 160 0.79 7 11 3 9.3e+04 -9.8 9.4 10 11 173 174 162 183 0.59 8 11 1.9 5.9e+04 -3.5 0.2 9 11 201 203 201 205 0.78 9 11 2.8 8.8e+04 -4.0 0.7 15 18 209 213 208 214 0.61 10 11 2.1e-07 0.0065 18.8 12.5 1 16 219 234 219 245 0.87 11 11 6e-07 0.018 17.3 13.2 1 19 251 270 251 270 0.95
Sequence Information
- Coding Sequence
- ATGGCTGCCTCTCGAAGAAAATTTATCGCTACCGCTCAATCCCCTTATCTGGGTTTCATTCTAACAGACAACCCCCACCATTGCAAAGAGAAGTGTCACAATGGCAAATGCCCTTCATGCCCATTAAGTACGCTTGTGAAGTGTCGCTGCGGCAATATGGACAGAGAAATCCCGTGTATTGAGCTCACCACACGAGCTGATGATGCCAGGTGTGAGAAAAAATGCACCAAGAAACGTGCATGTGGCAAACATCGTTGTAACCAGCTGTGCTGCATTGACGTTGATCACGTATGCCCCATGGTGTGCAACCACATGTTGACCTGCGGGCAGCACCGCTGTGATGAACCTTGCCACCGCGGACATTGCCGCCCCTGTTGGAGGACAAGTTTTGATGAGCTGTACTGTGAGTGTGGGGCAAGCGTGTTATACCCTCCAGTCCCCTGTGGCACAAGGCGCCCATCGTGCTCCAAGCCCTGCTCCAGACCCCACCCTTGTGAGCACCCACCGATCCACAACTGCCACAGCGAGCCGACTTGTCCACTGTGTACAGTACTCACCCAGAAGTACTGCTATGGCAAGCATGAGCTTCGCAAGACCATTCCATGCCACCAGGCGGATTTCTCGTGCGGTCTCCCGTGCAACAAGGACTTGCCTTGTGGCCGCCACCGCTGCATCTTGCCATGTCACAAGGGCCCCTGTCTGAAAGAAGGCCAGGCGTGTACACAGCCTTGCACCACCACAAGGAACCTCTGTGGACATAACTGTGCCAGTCCTTGCCACGATGGACCATGCCTCGACTCTCCTTGCAAGGAAATGGTAAAGGTTACATGCGAGTGTGGCCACAGATTCACTACTCGAGCCTGCTTTGACAATGTGAAGGAGTACCAGCGCATGGCAACATCACTGTTGGCTTCCAAGATGGCGGACATGCAGTTAGGACATTCTGTCGACATTGGTGACCTGTTTAGTAATCCAACCACTCGCAAAATGAGCCTTAAAACgctTGAGTGCAATGATGAGTGCAAATTGATTGAAAGAAATAGACGTATGGCTATAGGGCTGCAGATTCGTAATCCTGATCTAAGCGCCAAATTGACGCCTCGCTATTCAGAGTTTATGCGACAGTGGGCGAAGAAAGACCCTAATTTATGTAATATGGTTCAAGAGAAGTTAACAGAACTAGTTCAGTTAGCTAAACAGtcgAAGCAAAAGAGTCGTAGCCACTCATTTGATCCGATGAACCGAGACAAACGTCAGTTTGTTCATGAGTATTGTGAACATTTTGGATGTGAGTCCATGGCTTATGACCAGGAGCCCAAACGTAATGTCGTAGCTATAGCTACAAGAGACAAGGCTTGGCTTCCTAGCATGAGTTTGATGGAAGTTATTCAGCGAGAAAATGGACAACGGAAGATCCCAAAACCTGTTATTAATGCAAACAGAACCCCATCCCTCAGAGATATATTGAGTTTCAACGGGATTTATTTAGCAGAAATATTCTGCGGCACAGGATTGTATAACATGGATGGGATACGAGCATGGATCTTTGTACCTGTGCATATTGCCAGGTCACAGCAGGCAGGGTAG
- Protein Sequence
- MAASRRKFIATAQSPYLGFILTDNPHHCKEKCHNGKCPSCPLSTLVKCRCGNMDREIPCIELTTRADDARCEKKCTKKRACGKHRCNQLCCIDVDHVCPMVCNHMLTCGQHRCDEPCHRGHCRPCWRTSFDELYCECGASVLYPPVPCGTRRPSCSKPCSRPHPCEHPPIHNCHSEPTCPLCTVLTQKYCYGKHELRKTIPCHQADFSCGLPCNKDLPCGRHRCILPCHKGPCLKEGQACTQPCTTTRNLCGHNCASPCHDGPCLDSPCKEMVKVTCECGHRFTTRACFDNVKEYQRMATSLLASKMADMQLGHSVDIGDLFSNPTTRKMSLKTLECNDECKLIERNRRMAIGLQIRNPDLSAKLTPRYSEFMRQWAKKDPNLCNMVQEKLTELVQLAKQSKQKSRSHSFDPMNRDKRQFVHEYCEHFGCESMAYDQEPKRNVVAIATRDKAWLPSMSLMEVIQRENGQRKIPKPVINANRTPSLRDILSFNGIYLAEIFCGTGLYNMDGIRAWIFVPVHIARSQQAG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00821461;
- 90% Identity
- -
- 80% Identity
- -