Tdou036403.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010004901.1:53152-55866[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-06 0.024 17.1 0.1 26 53 72 99 69 100 0.91 2 2 8.4e-05 1.9 10.9 0.2 25 48 138 161 118 163 0.88
Sequence Information
- Coding Sequence
- atggggctactgtacctgcaGGAAATAGACACACCAAACTGCACTGTCGAATACAAGGCTCACGTCCGACCCGGTCTTCCAGGCAGCCTCACAGACGAGTCCGTCCCCGGCAGCCCATCCGTCCCCGGCTTCTTCCCGTGCAAGACGTGCGGCGAGCGGTTCAGTGATGTGAACTCTGCTCTGGCGCACTCGACTATCCACTTTGATCTGGTCCAGTGCAGCATCTGCTCTGCCATCCTCAGTCGCCGCAGAAACCTCAAGAAACACATGCTCTTGGTCCACAGCATAAAGTTAGGGCCCCACCGTCGTCACAACAAGGAGGCTGGGGACGAGTTTAGCTGCGGGGTGTGCGGCAAGAGGTTCCGCCACCAGATCTCGGTGAAGCTGCACCAAACCCTGCACCAAGGCAACACCGTGTGCCCCCTGTGCGGCATAGTGCTCAGTCGCACGTACAGCTTGAAGAGACATCTGGCAACAGTGCACGGCGTCGACTAG
- Protein Sequence
- MGLLYLQEIDTPNCTVEYKAHVRPGLPGSLTDESVPGSPSVPGFFPCKTCGERFSDVNSALAHSTIHFDLVQCSICSAILSRRRNLKKHMLLVHSIKLGPHRRHNKEAGDEFSCGVCGKRFRHQISVKLHQTLHQGNTVCPLCGIVLSRTYSLKRHLATVHGVD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01447013; iTF_01450994;
- 90% Identity
- iTF_01447013;
- 80% Identity
- iTF_01447013;