Tdou041866.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010006616.1:16787-19431[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.016 3.7 10.4 1.1 1 19 2 20 2 23 0.93 2 12 1.4e-06 0.00034 23.2 1.9 1 23 57 79 57 79 0.97 3 12 0.00046 0.11 15.3 3.1 1 23 85 107 85 107 0.98 4 12 3.2e-05 0.0077 18.9 0.2 1 23 113 135 113 135 0.98 5 12 2.3e-05 0.0055 19.3 1.7 3 23 143 163 141 163 0.96 6 12 0.00074 0.18 14.6 1.2 1 23 169 191 169 191 0.97 7 12 8.1e-07 0.00019 23.9 1.3 1 23 197 219 197 219 0.97 8 12 1.2e-06 0.0003 23.3 0.1 1 23 225 247 225 247 0.98 9 12 0.00017 0.04 16.6 2.2 1 23 253 275 253 275 0.97 10 12 6.3e-06 0.0015 21.1 1.8 1 23 281 303 281 303 0.98 11 12 1.3e-06 0.00031 23.3 0.6 1 23 309 331 309 331 0.97 12 12 2.2e-06 0.00052 22.6 0.2 1 23 336 359 336 359 0.97
Sequence Information
- Coding Sequence
- ATGTTCCCCTGCAGCTTTTGCGACAATGTCTACACCAGACCAGAGTATCTCGGGAGGCACAACTGCAGGAGGAGTAAAATGTCAAAGGCCAAAAGTCGACGCAAGAGGCCTGTTGAATTTATCTTCAACGAAAGTGAGCCTAGGAACAGCGTCATCAGACCGGACAGGTTCTCTTGTGGCGTGTGTGGCAAGATGTTTGTTCGGCGCTACCATCTCACGGCGCACGAGAAGTACCATTCTAATGTCAAACCGTTTGAGTGTACGATGTGTGACTCGAAGTTCCACCGGAAAACAGACCTGACTGTGCACTCGCGCATTCACAGCGGAGAGAAGCCATTTGAGTGTACAATATGTGGGGCGCGCTTTAATCAGAACTCTATACTAACCACGCACGTACGCATCCACACTGGCGAGAAACCGTTTGGCTGCACCGTGTGTGGGGAGAAGTTCCGCAAGAGCTCGTACTTGAAGAGACACTTCATGAACCACACGGGGGAGAGACCCCACGTGTGTTCTGTATGTGGGGCCAAGTTCAGACTCAAATCTGTGTTTACCGCTCACTTTAGGATACACACGGGGGAAAAACCGTTTGCCTGTACATTTTGCGACTCGCGGTTCAAACAGAACTCTGACCTGAAGGCCCACATCAGGACGCATACGGGAGAGAAACCATATGCTTGTACCATCTGTCCCGCGCGTTTCAGCCAGAGCTCAGCACTCAAGTCACATGTACGCATCCATACAGGCGAACGTCCGTACAGCTGCAATGTTTGCTCTCTGAAGTTCAGAGCAAAGTCAGATCTGAAACGACATTCGTTCACTCATGTGGCGGACAAACCATTCAACTGCGGAGATTGCGGCGCTAAATTCAACCAGCTGGCGCATCTTAGGAACCATACACGCCGACACACAGGTGAGAAGCCATTTTCTTGCCCACTTTGTGGTAAAAAGTTTGGTCGGTCGTCAACTCTTGCCAAGCACAAAGCAAGTCACAAGGAGATACGATACAACTGTTTGGAGTGCCCCGAGAAGTTCAAGACGTCGGTTGATCTTATAAAACATATCAGGAGCGCTCACAAGTGA
- Protein Sequence
- MFPCSFCDNVYTRPEYLGRHNCRRSKMSKAKSRRKRPVEFIFNESEPRNSVIRPDRFSCGVCGKMFVRRYHLTAHEKYHSNVKPFECTMCDSKFHRKTDLTVHSRIHSGEKPFECTICGARFNQNSILTTHVRIHTGEKPFGCTVCGEKFRKSSYLKRHFMNHTGERPHVCSVCGAKFRLKSVFTAHFRIHTGEKPFACTFCDSRFKQNSDLKAHIRTHTGEKPYACTICPARFSQSSALKSHVRIHTGERPYSCNVCSLKFRAKSDLKRHSFTHVADKPFNCGDCGAKFNQLAHLRNHTRRHTGEKPFSCPLCGKKFGRSSTLAKHKASHKEIRYNCLECPEKFKTSVDLIKHIRSAHK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01447157;
- 90% Identity
- iTF_01447157;
- 80% Identity
- iTF_01447157;