Basic Information

Transcription Factor Domain

TF Family: PC4
Domain: PC4 domain
PFAM: PF02229
TF Group: Unclassified Structure
Description: This domain is found at the C-terminal end of Activated RNA polymerase II transcriptional coactivator p15 from humans, YdbC from Lactococcus lactis, and other PC4 family members. p15 has a bipartite structure composed of an N-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain [1-4]. Activity is controlled by protein kinases that target the regulatory domain.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.051 1.6e+03 1.0 0.0 16 25 107 116 106 125 0.82

2 9 0.05 1.5e+03 1.0 0.0 16 25 139 148 137 157 0.83

3 9 0.05 1.5e+03 1.0 0.0 16 25 163 172 161 181 0.83

4 9 0.05 1.5e+03 1.0 0.0 16 25 187 196 185 205 0.83

5 9 0.05 1.5e+03 1.0 0.0 16 25 211 220 209 229 0.83

6 9 0.05 1.5e+03 1.0 0.0 16 25 235 244 233 253 0.83

7 9 0.05 1.5e+03 1.0 0.0 16 25 259 268 257 277 0.83

8 9 0.05 1.5e+03 1.0 0.0 16 25 283 292 281 301 0.83

9 9 0.074 2.3e+03 0.5 0.0 16 25 307 316 305 317 0.87

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.051	1.6e+03	1.0	16	25	107	116	106	125	0.82
2	9	0.05	1.5e+03	1.0	16	25	139	148	137	157	0.83
3	9	0.05	1.5e+03	1.0	16	25	163	172	161	181	0.83
4	9	0.05	1.5e+03	1.0	16	25	187	196	185	205	0.83
5	9	0.05	1.5e+03	1.0	16	25	211	220	209	229	0.83
6	9	0.05	1.5e+03	1.0	16	25	235	244	233	253	0.83
7	9	0.05	1.5e+03	1.0	16	25	259	268	257	277	0.83
8	9	0.05	1.5e+03	1.0	16	25	283	292	281	301	0.83
9	9	0.074	2.3e+03	0.5	16	25	307	316	305	317	0.87

Coding Sequence: ATGCAACCAAACGCCACCACAACCACCGACAGACGGCGGTCGGTTGCGTGTGAGGTCACGAGTTGTCGGCTTCAGACGTCCGACAGACTGTCTGTAGTATGCGGTCACGAGTTGTCGGCTTCAGACGTCTGTCATGTACGTGCatcaattattgaaaatatcgcCATCACTAAGTGTCTTAGACGAATACAAATCGCCCGCAAAGTATCGTCGTCCAAGGAATCATCATCCCTGCTCAACACCCAGCAACGCCCCCTGCTCGACACCCAGCAGCACCCCCTGCTCAACACCCAGAAGCCCCCTCTGCTCGAAGCCCGGCAACGCCCACTGCTCGACATCCGGCAGTACCCTCTGCTCAACACCCAGCAGCACCCTCTGCTCAACACCCAGCAGCACCCTCTGCTCGAAGCCCGGCAACGCCCCCTGCTCGACATCCGGCAGTACCCTCTGCTCAACACCCAGCAGCACCCTCTGCTCGAAGCCCGACAACGCCCACTGCTCGACATCCGGCAGTACCCTCTGCTCAACACCCAGCAGCACCCTCTGCTCGAAGCCCGGCAACGCCCACTGCTCGACATCCGGCAGTACCCTCTGCTCAACACCCAGCAGCACCCTCTGCTCGAAGCCCGGCAACGCCCACTGCTCGACATCCGGCAGTACCCTCTGCTCAACACCCAGCAGCACCCTCTGCTCGAAGCCCGGCAACGCCCACTGCTCGACATCCGGCAGTACCCTCTGCTCAACACCCAGCAGCACCCTCTGCTCGAAGCCCGGCAACGCCCACTGCTCGACATCCGGCAGTACCCTCTGCTCAACACCCAGCAGCACCCTCTGCTCGAAGCCCGGCAACGCCCACTGCTCGACATCCGGCAGTACCCTCTGCTCAACACCCAGCAGCACCCTCTGCTCGAAGCCCGGCAACGCCCACTGCTCGACATCCGGCAGTACCCTCTGCTCAACACCTAG
Protein Sequence: MQPNATTTTDRRRSVACEVTSCRLQTSDRLSVVCGHELSASDVCHVRASIIENIAITKCLRRIQIARKVSSSKESSSLLNTQQRPLLDTQQHPLLNTQKPPLLEARQRPLLDIRQYPLLNTQQHPLLNTQQHPLLEARQRPLLDIRQYPLLNTQQHPLLEARQRPLLDIRQYPLLNTQQHPLLEARQRPLLDIRQYPLLNTQQHPLLEARQRPLLDIRQYPLLNTQQHPLLEARQRPLLDIRQYPLLNTQQHPLLEARQRPLLDIRQYPLLNTQQHPLLEARQRPLLDIRQYPLLNTQQHPLLEARQRPLLDIRQYPLLNT*

Sequence clustering based on sequence similarity using MMseqs2