Tdou019223.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- bab1
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010001626.1:77428-83979[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-17 1.8e-14 55.4 0.0 1 43 42 85 42 87 0.95
Sequence Information
- Coding Sequence
- ATGTTTCTTCTAGCAGACAGCTACCAGTACCAACTGCAGTCCATGTGGCAGAAGTGCTGGAACACCAACCAAAGCCTGGTTCACAACCTGCGGTTTAGGGAGCGGGGTCCCCTCAAATCTTGGCGGCCGGAAACCATGGCGGAGGCCATATTCTCGGTGCTGAAGGAAGGTCTCTCGCTGTCTCAAGCTGCTCGCAAGTACGACATCCCCTACCCCACCTTCGTGCTGTACGCTAACAGGGTGCACAACATGCTGGGGCCGTCCGCTGACGGTGGCGCAGATCTGCGTCCCAAGGGCCGAGGACGACCACAGCGGATCCTGTTAGGCTCTTGGCCAGAGGACCATATCCGAGGGGTGATCCGGGCAGTCGTATTTCGAGACCCGCAGCACATCAAGGAGGAACCCCACATGGGCTACCCGCGCCTTTCATACACAAAAAATGCCAAACAGCAATTTGCTACAGAATCACACAACATCCTCACCGCTATACCCTACCAATGGTga
- Protein Sequence
- MFLLADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGSWPEDHIRGVIRAVVFRDPQHIKEEPHMGYPRLSYTKNAKQQFATESHNILTAIPYQW*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370150; iTF_01410677; iTF_00623926; iTF_01490867; iTF_00090333; iTF_00620484; iTF_00849720;
- 90% Identity
- iTF_01410677;
- 80% Identity
- -