Tdou003966.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- lolal
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010000182.1:29891-82453[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.3e-11 2.6e-08 35.7 0.0 1 38 357 395 357 400 0.90 2 4 1.4e-12 8.3e-10 40.5 0.1 1 39 411 449 411 452 0.95 3 4 9.5e-18 5.8e-15 57.0 0.0 1 45 466 511 466 511 0.97 4 4 9.1e-19 5.6e-16 60.3 0.1 1 43 518 561 518 562 0.97
Sequence Information
- Coding Sequence
- ATGCCTCAAGATGTTTGCTTTAGTGACTTGAAATTCATTATAGAGTTTGTGTATAGAGGAGAAATAGATGTGTCGCAAGCTGAATTACAGTCACTTCTAAAGACTGCCGATCAGCTAAAGATAAAAGGCCTGTGCGAGGTGCCCGAGGGTAAGGAAGGGGCCAACTATTCATCAGCGGAGGTGACTCCTTTACCCATTCTATCCCGTCGCTCATTTACCAAACTACGCCGACTCTCTGGATCGAAACGTCCACGTGGACCAGAACCAGTGCGAAGGGCCATCTTTAAGGAGTGTGATGGAGAGCATGAACATCACGATCATCATGACCACTCGCTCCCTTCACCGCCCCTACATTCTGTTACTCATCCAGCAGGTCCTTACTTGGGTATGACGATGGATGTAAGTGGCATTACAGAACTATCAATTCGACCTGGAGTGCTCGACAACAGAGTCCCTGAATGTGTAACAGTAGCCACATCTACCGAGGATGATCAGATGGAACTGCCTATAGTAGTTTTAGAGACGAGACCCCCTCCAACTTTACAGTTGGGAAACACAAATGGTAGCACCTCTGGCATTGGCTCTCACCACAGTGGTTTGTCCCAGTCTCCCCATATTGTGCTGGAGGGGACCAATCACAGCTCAAGTAACACCACAGATGTGGACATACCTCCGGAAGCACAACCACCTGCACCGTCTGCAACGCTGGTGGAGAATTTAGACATCCACGAGTGCTCGGATCATGACAGGAGAGAACTGACCGATGTTATCCAGTTAACATCAGATGCAGATGGTTCTAGTGTGTCTCAGCGAGAAACTGAAGATGTTAAAGTTAAGTTTGAAACCCTACGTGCCATGGAACAGGCGGAAACTATCGACATAAACAGCCACTTGTCCGACAGAaatGTAGGCGAGGATGAACATACAATGCACACTATGATGATCACACCAGAACTACTTGGGTTAATTCCTTCATCATCGGGACAATCGGGTGCGCAATCCCCCTCTTTGTCATCAGATGTGAGTAGCGACGCAGGCAAATGTGGCATTATGGGCCCCAAGACGTGGACACAGGAGGATATGGAACTTGCCTTGGATGCACTGAGAAACCACAACATGAGTCTTACTAAGGCATCTGCAACTTATGGCATTCCTTCCACCACTTTGTGGCAACGAGCTCACCGCATGGGGATTGACACCCCCAAAAAGGAGGGCCCCACTAAGTCTTGGACAGAGGAAAACCTCAATAGTGCACTGGAGGCACTCAGAACTGGCTCTATATCTGCTAACAAAGCCAGCAAAGCTTATGGTATACCCAGCAGTACCCTGTACAAAATTGCGCGTCGTGAAGGAATACGTTTGGCTGCTCCATTTAATGCTGCGCCTACAACTTGGACTCAAGATGACCTTGAACGAGCTCTAGAAGCTATTCGTTCAGGACAAACATCGGTTCAACGTGCCTCTACAGAATTTGGGATTCCTACAGGGACATTATACGGCCGTTGCAAACGAGAAGGTATTGAACTTTCTAGGAGTAATCCTACACCATGGTCAGAAGATGCAATGGGTGAAGCATTAGAAGCTGTGAGAGTTGGACAGATGAGCATCAACCAAGCGGCAATTCACTACAATCTTCCGTATTCTTCCTTGTATGGCAGATTTAAAAGGGGCAAGTACGAGGCGGAGGGGCACCAGCATCCGGATGAAACGGGCCACCACTCTCCCCCGACATCGGCACCACAGGTGATGATTGTCCCTTATCAACAACATACACATCTTCCACCCCAGCAACAACCCCCACAGCAGCaaccccctccacccccacAACACCACTCCCCTCAACAACATCCTATGTACCAGCAGCATGCCCCTCACAGCGCGAGTTGA
- Protein Sequence
- MPQDVCFSDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEGKEGANYSSAEVTPLPILSRRSFTKLRRLSGSKRPRGPEPVRRAIFKECDGEHEHHDHHDHSLPSPPLHSVTHPAGPYLGMTMDVSGITELSIRPGVLDNRVPECVTVATSTEDDQMELPIVVLETRPPPTLQLGNTNGSTSGIGSHHSGLSQSPHIVLEGTNHSSSNTTDVDIPPEAQPPAPSATLVENLDIHECSDHDRRELTDVIQLTSDADGSSVSQRETEDVKVKFETLRAMEQAETIDINSHLSDRNVGEDEHTMHTMMITPELLGLIPSSSGQSGAQSPSLSSDVSSDAGKCGIMGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGPTKSWTEENLNSALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQDDLERALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHQHPDETGHHSPPTSAPQVMIVPYQQHTHLPPQQQPPQQQPPPPPQHHSPQQHPMYQQHAPHSAS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445566; iTF_01445774;
- 90% Identity
- iTF_01445566; iTF_01445774;
- 80% Identity
- -