Tcri005928.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema cristinae
Gene Symbol
bab2
Assembly
GCA_002928295.1
Location
CM009474.1:7016905-7074026[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 1.3e-11 1.6e-08 35.5 0.0 1 38 432 470 432 475 0.90
2 4 4e-13 5.2e-10 40.3 0.1 1 39 486 524 486 527 0.95
3 4 2.8e-18 3.7e-15 56.8 0.0 1 45 541 586 541 586 0.97
4 4 2.7e-19 3.5e-16 60.1 0.1 1 43 593 636 593 637 0.97

Sequence Information

Coding Sequence
ATGGCAGGGCAGCACTACTGCCTACGCTGGAATAATTATCAATCAAACATGACATCAGTTTTCCACCAGTTGCTGAGAAATGAAGCATTTGTTGACGTAACACTGGCTTGTAATGACTCCTCACTGAAAGCTCACAAGGTTGTATTGTCTGCATGCTCATCATACTTCCAGAAGCTTTTACTGGAGAATCCATGTAAACATCCAACTATAATAATGCCTCAAGATGTTTGCTTCAGTGACTTGAAATTCATTATAGAGTTTGTGTATAGAGGAGAAATAGATGTGTCGCAAGCTGAATTACAGTCACTTCTAAAGACTGCTGATCAGCTAAAGATAAAAGGCCTGTGCGAGGTGCCCGAGGGTAAGGAAGGAGCCAACTATTCATCAGCAGAGGTGACTCCTTTACCCATTCTATCCCGCCGCTCTTTTACCAAACTACGCCGACTCTCTGGATCGAAACGTCCACGTGGACCAGAACCAGTGCGAAGGGCCATCTTTAAGGAGTGTGATGGAGAGCATGAACATCATGACCATCATGACCACTCGCTTCCTTCACCACCCTTACATTCTGTTACTCATCCAACAGGTCCTTACTTGGgTATGACGATGGATGTAAGTGGCATTACAGAACTATCAATTCGACCTGGAGTGCTGGACAACAGAGTCCCTGAATGTGTAACAGTAGCCACATCTACTGAGGATGATCAGATGGAACTGCCTATAGTAGTTTTAGAGACAAGACCCCCTCCAACTTTACAGTTGGGAAACACAAATGGTAGCACCTCTGGCATTGGCTCTCACCACAGTGGTTTGTCCCAGTCTCCCCATATTGTGCTGGAGGGGACCAATCACAGCTCAAGTAACACCACAGATGTGGACATACCTCCGGAAGCACAGCCACCTGCACCGTCTGCAACGCTGGTGGAGAATTTAGACATCCATGAGTGCTCGGATCATGACAGGAGAGAACTGACCGATGTTATCCAGTTAACATCAGATGCAGATGGTTCTAGTGTGTCTCAGCGAGAAACTGAAGATGTTAAAGTTAAGTTTGAAACCCTACGTGCCATGGAACAGGCGGAAACTATTGACATAAACAGCCACTTGTCCGACAGAGTAAGTGACCATAATGTAGGTGAGGATGAACATACAATGCACACTATGATGATCACACCAGAACTACTTGGGTTGATTCCTTCATCATCGGGACAATCGGGTGCGCAATCCCCCTCTTTGTCATCAGATGTGAGTAGCGACGCAGGCAAATGTGGCATTATGGGCCCCAAGACGTGGACACAGGAGGATATGGAACTTGCCTTGGATGCACTGAGAAACCACAACATGAGTCTTACTAAGGCATCTGCAACTTATGGCATTCCTTCCACGACTTTGTGGCAACGAGCTCACCGCATGGGAATTGACACCCCCAAAAAGGAGGGTACCACTAAGTCTTGGACAGAGGAAAACCTCAATAGTGCACTGGAGGCACTCAGAACTGGCTCTATATCTGCTAACAAAGCCAGCAAAGCTTATGGTATACCCAGCAGTACCCTGTACAAAATTGCTCGTCGTGAAGGAATACGTTTGGCTGCTCCATTTAATGCTGCGCCTACAACTTGGACTCAAGATGACCTTGAACGAGCTCTAGAAGCTATTCGTTCAGGACAAACATCTGTTCAACGTGCCTCTACAGAATTTGGGATTCCTACAGGGACATTATACGGCCGTTGCAAACGAGAAGGTATTGAACTTTCTAGGAGTAATCCTACACCATGGTCAGAAGATGCAATGGGTGAAGCATTAGAAGCTGTGAGAGTTGGACAGATGAGCATCAACCAAGCGGCAATTCACTACAATCTTCCGTATTCTTCCTTGTATGGCAGATTTAAAAGGGGCAAGTACGAGGCGGAGGGGCACCAGCATCCGGATGAAACGGGCCACCACTCTCCCCCGACATCGGCACCACAGGTGATGATTGTCCCTTATCAACAACATACACATCTTCCACCCCAGCAACAACCCCCACAGCAGCaaccccctccacccccacaACACCACTCCCCTCAACAACATCCTATGTACCAGCAGCATGCCCCTCACAGCGCGAGTTGA
Protein Sequence
MAGQHYCLRWNNYQSNMTSVFHQLLRNEAFVDVTLACNDSSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCFSDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEGKEGANYSSAEVTPLPILSRRSFTKLRRLSGSKRPRGPEPVRRAIFKECDGEHEHHDHHDHSLPSPPLHSVTHPTGPYLGMTMDVSGITELSIRPGVLDNRVPECVTVATSTEDDQMELPIVVLETRPPPTLQLGNTNGSTSGIGSHHSGLSQSPHIVLEGTNHSSSNTTDVDIPPEAQPPAPSATLVENLDIHECSDHDRRELTDVIQLTSDADGSSVSQRETEDVKVKFETLRAMEQAETIDINSHLSDRVSDHNVGEDEHTMHTMMITPELLGLIPSSSGQSGAQSPSLSSDVSSDAGKCGIMGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGTTKSWTEENLNSALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQDDLERALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHQHPDETGHHSPPTSAPQVMIVPYQQHTHLPPQQQPPQQQPPPPPQHHSPQQHPMYQQHAPHSAS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01446402;
90% Identity
iTF_01446402;
80% Identity
iTF_01445774;