Tcri008236.1
Basic Information
- Insect
- Timema cristinae
- Gene Symbol
- CngA
- Assembly
- GCA_002928295.1
- Location
- CM009474.1:54983939-55015123[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.61 5.2e+03 -0.9 0.1 29 44 227 244 213 253 0.46 2 3 6 5.1e+04 -5.0 2.4 35 40 473 479 471 482 0.40 3 3 1.5e-18 1.3e-14 55.6 9.7 2 68 531 594 530 596 0.89
Sequence Information
- Coding Sequence
- ATGAGGTGTTCTCCGTGTAATGTCGGGGCCGGGGGCTGTGTTCCGCAGGAGAGATGGCGGCGGTCCAGGGGGCGGCTCTCAAACAGGGATCCGCGACCAGCTGACGGCTTCCTCGCCAAGTTCTCGACGGCGGGTTCTATGGAGGACGAGAGTGAGGGCTCCTGTTGCTGGGGACACCGGCTGGCCGTGGACCCTACTCTGCCATTCCACTACCGGAACATTCTAGAAGCCAAGTCTTCATCAACAACCCTGTTGAAAAGCTCAGATGAGAACACTCGTGTAATATTGGTCAGGACCGTAGTAAGGACCGTAGCTATTCCACGTCGATCACAAGACCGTATCAATCTTGATCCAATCACATTTCAAACATCCCAGTTCCCTAAGAAGATAAATATCAGCGTGTGTGATATAGGACCGGATGGTTACCTCGAGCAGGGTCTGATGGAGAGGGACGCCCGCAAGTTGAGGCAGCACTATCTGAGCTCCAACAAGTGGAGGACTGACGTACTGAGCCTTCTACCCACGGACCTTGCCTACCTCTGGTGGCCGCCTTATCAGTGCAGCGTCAAGGTCCCTTGTCCCGTCATCGTCAGGTTGAACAGACTGCTCAGGTTCCCCAGGATGAGCCAGTACTTCGACAAGACGGAGACTCGCACCGGATACCCCAATGCCTTCCGGATATGCAAGGTTGTTTTAGCAATCTTGGTGTTGATTCACTGGAACGCGTGTTTCTACTTCGCCATCAGTTACGTGATAGGTTTCGGGTCAGACAACTGGGTATACAACCTGAGGGGGGACAAGAACAGCACCCTGTCCAGACAATACATCTACAGCTTCTACTGGTCAACACTCACTCTCACCACCATAGGTAAGAGAGGGCTCTTCCAGAACCAACACTCTCACCACCATAGTACGGGCCAGATGACGTCAGCGCAGATCTTTCAGGTGTTCAGTCCTGGAGACTACATCTGCCGAAAGGGAGACGTGGGAAAGGAGATGTACATCGTGAAGAGAGGACGTCTGATCGTGGTGGCTGACGACGGTCGGACTGTCCTGGCTACTTTGGGGGCGGGCAGTGTCTTCGGCGAGGAGCAGCGACTCCGCGCGGCTGGACGATCGCCTCAGCCTCGAGCTGACGTCCAAGAACGACCCGAGTCGGGCGATGAGGCGATCCTTTCAAGGAGCGCCCAGAATCCGACGTCACAAACAGAACACCATGTGAGACGTACTTCTGCTGTACGAACAGACTTGGGCTGGGCTTCACCTTGCGATCATTCAACTTGTGACGCCACTGTCAACAATGCGAGTGCTTTGTTGTATTTGTCACGCATCTTTCTGCAGCAACATCGCAGCCATCACAGTTGTAAATATTTTCGTGATGAGGAGAAAAGAGGAGTTGAGGAAGCAGGAGACTTGTGTTTGATGTGTCATTGCTGGTGCACCCAGGGAGAGAAGGGTAAGAAAGAGGCCAGTCGACGCAAGGCTGAAAAGAAGGATTTCGACCATGACTACCCAACCTCAGGGAAGAAGAGTGTGTTCGCCTTCCTGGCTCCTCCCAAGAAAGAGAAACTGGAGTACAAGATCGGCCGTACCTCTGAAAGGATGACTTGTCCCAACTGTGGGTGCGCCATCAAGACTCACACCAAACACACCATGACCATGGGTACATACGTGGCGACCATCCTACTGATTCCTCTCATGCTCTGCTGGGTGCCGATGACCATGAAGAAGTTCCAGAACGTTCGCCATTACTGCCCTGTCTGCGAGGCCTTCTTGGGGGTATGCCCCCCTGGCAAGAATCTGGACGTACGTGTGGTCTATTCTGACGATAGTGGAGATGGTCTCTACTACTGGCGTCTCACAGTTGTAGCGTCCAAACCACCAGTCTCCGGGGAGTCTGATGACAGGAGCGATGCATGA
- Protein Sequence
- MRCSPCNVGAGGCVPQERWRRSRGRLSNRDPRPADGFLAKFSTAGSMEDESEGSCCWGHRLAVDPTLPFHYRNILEAKSSSTTLLKSSDENTRVILVRTVVRTVAIPRRSQDRINLDPITFQTSQFPKKINISVCDIGPDGYLEQGLMERDARKLRQHYLSSNKWRTDVLSLLPTDLAYLWWPPYQCSVKVPCPVIVRLNRLLRFPRMSQYFDKTETRTGYPNAFRICKVVLAILVLIHWNACFYFAISYVIGFGSDNWVYNLRGDKNSTLSRQYIYSFYWSTLTLTTIGKRGLFQNQHSHHHSTGQMTSAQIFQVFSPGDYICRKGDVGKEMYIVKRGRLIVVADDGRTVLATLGAGSVFGEEQRLRAAGRSPQPRADVQERPESGDEAILSRSAQNPTSQTEHHVRRTSAVRTDLGWASPCDHSTCDATVNNASALLYLSRIFLQQHRSHHSCKYFRDEEKRGVEEAGDLCLMCHCWCTQGEKGKKEASRRKAEKKDFDHDYPTSGKKSVFAFLAPPKKEKLEYKIGRTSERMTCPNCGCAIKTHTKHTMTMGTYVATILLIPLMLCWVPMTMKKFQNVRHYCPVCEAFLGVCPPGKNLDVRVVYSDDSGDGLYYWRLTVVASKPPVSGESDDRSDA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -