Tbar027636.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- stc
- Assembly
- GCA_902151455.1
- Location
- CABFWB010002401.1:45252-82769[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.9 8.3e+04 -4.1 1.6 15 19 360 364 359 364 0.81 2 15 0.064 2.8e+03 0.7 0.3 4 10 393 399 392 401 0.94 3 15 2.1e-07 0.0089 18.2 13.5 4 18 410 424 408 425 0.94 4 15 3.4e-06 0.15 14.3 11.8 1 18 461 478 461 479 0.96 5 15 2 8.7e+04 -4.2 1.4 9 13 485 489 484 490 0.72 6 15 2.4e-08 0.001 21.2 14.6 1 18 519 536 519 537 0.97 7 15 9.5e-05 4.1 9.7 18.2 4 19 586 601 579 601 0.87 8 15 1.3 5.5e+04 -3.5 2.0 5 10 630 635 630 635 0.93 9 15 0.0005 21 7.4 8.1 1 11 641 651 641 652 0.97 10 15 2 8.7e+04 -4.1 0.7 4 10 656 662 656 662 0.82 11 15 1.3e-08 0.00054 22.1 16.1 1 19 668 686 668 686 0.98 12 15 1.1 4.7e+04 -3.3 0.7 6 10 715 719 714 720 0.79 13 15 2 8.7e+04 -5.6 3.7 10 12 733 735 730 743 0.50 14 15 1.7e-07 0.0072 18.5 11.7 1 16 779 794 779 805 0.87 15 15 8.4e-07 0.036 16.3 13.2 1 19 811 830 811 830 0.95
Sequence Information
- Coding Sequence
- ATGGCAAACTGGAATAGGCCAAATTCATATGATAGTGGAAGAAACCCAAACTACAACTTTCAATCAAGCGAATATTCCAGACGAAATCCACATCAGTATGGAGGGGTCTCTACAAATCTACCTTATTACTCTGCTCCAAACGAAGTGGGCGTGTCTACCCCCGTACAGAATACTCCTTTGTATGAAACTTCGGGAGCACCGGTTTTTAACACACCTATAGGTTATATAGATGCACATCAGTCGTTTCCATATTTTAACGATACAGCTGATGTAAGTGTTAATCTTCCTCAAAGGGAAGCTAATTTTGCTCTCGCAGCTTCATCATCTTTGACGGCAACAGCTGGAGAGTTTATACCGAGATCGACATCTGCGCTGCATTCAAGTAGTCGAAATGGTACGAAAAATTCTGTTTTACATGGTGGCCAAGATCAGCAGCAAACAAGACATTCTGACCAAGACTGGAGAAACAACCAGGTGTACAAAAATTCATTTACAGGCTATAATCGAGGCCAGGGTTACTTTGCAAGGGATGATCGAAACTCATCACAACCTAGGAGAACTAATATGGAAGATGCAAAAAGTCAAGATCGTAGCAGATTATTGGCTGAAGCTGCAGCATTTCTTATACCTAAACCCAATCAGGTCATGCCTGGATCTAGTGTTACTAATGAAAACGCCGGGTCTGTTGATACCAAGTCTCAAAATGATGCCGGGGCTACAAACCCTATGAATCCTAGAAGAAACACTAATATTTCTGGCTACACGAAGCAACCACAGTATTACTCCCAGCAAGGAAACGATCCAAGAGATAGAATGCCAGTAACGCTAGAAACATTTGGGGCATCTCAAAGCTATGGTAGAAATCATCGTACTTCATATAGCAACTCTGATGACGAGGCAAGTCAGAGGGAGCGCCTTGTTGAGCAGTTGACTAAAGGCACACTGGAGTGCTTGGTATGCTGTGATCGTGTTCGCCAACAAGATCCCGTTTGGAGCTGCGGGAATTGCTACCATGTGTTGCACCTTAAATGTATCAAGAAGTGGGCCAAGTCTTCCAAAGTTGAAACTGGATGGCGCTGCCCTGCCTGCCAGAATGTCACAGAGAAGGTCCCACAGCTGTATCGCTGTTTCTGCAGCAAGGCGATTGAGCCCCAGTGGAATAGACAAGATGTCCCACACACTTGTGGCGAGATGTGTGGCAAGACTCGTGACAAACCGGATTGTGTGCATCGTTGCACTCTTCTCTGCCATCCGGGACCATGCCCCCCTTGTGTTgctcaagtaaacagACAATGCGGCTGTGGTGCAACATCTAAAGTGGTGAAGTGTGGTGGAGACAAGCCACTACTTTGTGACGCTCTCTGTGGCAAGGAGCTAAATTGTAGTGTGCACAAGTGCACCAGGAAATGCCACATAGGAGAATGCGGCAATTGTGAAGAAATTGTCATCCAAGCATGCCACTGTGGCAAAGAGTCTCGGAAGATTGCCTGCGACCTCACCTCAGTCGGGGTGACATACTTCTCCTGTGGAGGAATTTGTGAAAAGCATCTGACATGTGGGAACCACCAGTGCACTCTGGTGTGTCACACTGGCCCCTGTGGAGAATGCGAGCTCTCGCCTGATAAGGTCACACACTGTCCTTGTGGTAAAACTGAGCTTACAGCAGACCAGGCCAGAAACAGCTGCCTGGATACCATTCCCAACTGTCCGCTCATCTGTGGCAAGAAGCTAGCTTGCGGTCAACCCAACAACCCCCACCATTGCAAAGAGGAGTGTCACAACGGCAAATGCCCTCCATGTCCATTAAGCACGCTTGTGAAGTGTCGCTGCGGCAATATGGACAGAGAAATCCCATGTATTGAGCTCACCACACGAGCTGATGATGCCAGGTGTGAGAAAAAATGCACCAAGAAACGTGCATGTGGCAAACATCGTTGTAACCAGCTGTGCTGCATTGACGTTGATCACGTATGCCCCATGGTTTGCAACCACATGTTGACCTGCGGGCAGCACCGCTGTGATGAGCCATGCCACCGCGGACATTGCCGCCCCTGTTGGAGAACAAGTTTTGACGAGTTGTACTGCGAGTGTGGAGCAAGCGTGTTATACCCTCCAGTCCCCTGTGGTACGAGGCGTCCATCGTGCTCCAAGCCCTGCTCCAGACCCCACCCTTGTGAGCACCCACCGATCCACAACTGCCACAGCGAGCCGACTTGTCCACTGTGTACAGTGCTCACCCAGAAGTACTGCTATGGCAAGCATGAGCTTCGCAAGACCATTCCATGCCACCAGGCGGATTTCTCATGTGGTCTTCCCTGCAACAAGGACTTGTCTTGTGGCCGCCACCGCTGCATCTTGCCATGTCACAAGGGCCCCTGTCTGAAAGAAGGCCAGGCGTGTACACAGCCTTGCACCACCACAAGGAATCTCTGTGGACATAACTGTGCCAGTCCTTGCCACGATGGACCATGCCTTGACTCCCCTTGCAAAGAAATGGTAAAGGTGACATGCGAGTGTGGCCACAGATTCACTACTCGAGCCTGCTTTGACAACGTGAAGGAGTACCAGCGTATGGCAACATCACTGTTGGCTTCCAAGATGGCGGACATGCAGTTAGGACATTCTGTTGACATTGGTGACCTGCTTAGTAATCCAACCACTCGCAAAATGAGCCTTAAAACgctTGAGTGCAATGATGAGTGCAAATTGATAGAAAGAAATAGACGAATGGCTATAGGGCTGCAGATTCGTAATCCTGATCTAAGCGCCAAATTGACGCCCCGCTATTCAGAGTTTATGCGACAGTGGGCAAAGAAAGACCCTAATTTATGTAACATGGTTCAAGAGAAGTTAACAGAACTAGTTCAGTTAGCCAAACAGTCGAAGCAAAAGAGTCGCAGCCACTCTTTTGATCCGATGAACCGAGACAAACGTCAGTTTGTTCATGAGTATTGTGAACATTTTGGATGCGAGTCCATGGCCTATGATCAGGAGCCCAAACGTAATGTCGTAGCTATAGCTACAAGAGACAAGGTCACAGCAGGCAGGGTGGACCAAGAGATAAAGCTACCACTAGGGGTGTaa
- Protein Sequence
- MANWNRPNSYDSGRNPNYNFQSSEYSRRNPHQYGGVSTNLPYYSAPNEVGVSTPVQNTPLYETSGAPVFNTPIGYIDAHQSFPYFNDTADVSVNLPQREANFALAASSSLTATAGEFIPRSTSALHSSSRNGTKNSVLHGGQDQQQTRHSDQDWRNNQVYKNSFTGYNRGQGYFARDDRNSSQPRRTNMEDAKSQDRSRLLAEAAAFLIPKPNQVMPGSSVTNENAGSVDTKSQNDAGATNPMNPRRNTNISGYTKQPQYYSQQGNDPRDRMPVTLETFGASQSYGRNHRTSYSNSDDEASQRERLVEQLTKGTLECLVCCDRVRQQDPVWSCGNCYHVLHLKCIKKWAKSSKVETGWRCPACQNVTEKVPQLYRCFCSKAIEPQWNRQDVPHTCGEMCGKTRDKPDCVHRCTLLCHPGPCPPCVAQVNRQCGCGATSKVVKCGGDKPLLCDALCGKELNCSVHKCTRKCHIGECGNCEEIVIQACHCGKESRKIACDLTSVGVTYFSCGGICEKHLTCGNHQCTLVCHTGPCGECELSPDKVTHCPCGKTELTADQARNSCLDTIPNCPLICGKKLACGQPNNPHHCKEECHNGKCPPCPLSTLVKCRCGNMDREIPCIELTTRADDARCEKKCTKKRACGKHRCNQLCCIDVDHVCPMVCNHMLTCGQHRCDEPCHRGHCRPCWRTSFDELYCECGASVLYPPVPCGTRRPSCSKPCSRPHPCEHPPIHNCHSEPTCPLCTVLTQKYCYGKHELRKTIPCHQADFSCGLPCNKDLSCGRHRCILPCHKGPCLKEGQACTQPCTTTRNLCGHNCASPCHDGPCLDSPCKEMVKVTCECGHRFTTRACFDNVKEYQRMATSLLASKMADMQLGHSVDIGDLLSNPTTRKMSLKTLECNDECKLIERNRRMAIGLQIRNPDLSAKLTPRYSEFMRQWAKKDPNLCNMVQEKLTELVQLAKQSKQKSRSHSFDPMNRDKRQFVHEYCEHFGCESMAYDQEPKRNVVAIATRDKVTAGRVDQEIKLPLGV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449158;
- 90% Identity
- iTF_01449158;
- 80% Identity
- -