Basic Information

Insect: Timema bartmani
Gene Symbol: znf423
Assembly: GCA_902151455.1
Location: CABFWB010009857.1:1-3708[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0024 0.53 13.0 0.6 2 23 49 70 48 70 0.95

2 16 0.011 2.6 10.8 0.2 3 23 80 101 78 101 0.93

3 16 0.017 3.8 10.3 0.3 1 23 106 129 106 129 0.92

4 16 6.9 1.6e+03 2.1 0.4 1 23 136 162 136 163 0.87

5 16 1.5 3.5e+02 4.1 2.4 1 23 185 207 185 207 0.94

6 16 0.057 13 8.7 5.3 1 23 211 233 211 234 0.95

7 16 0.078 17 8.2 2.0 3 23 310 332 309 333 0.93

8 16 0.0025 0.57 12.9 4.6 2 23 350 371 349 371 0.96

9 16 0.41 93 5.9 0.5 1 23 381 403 381 403 0.94

10 16 2.4 5.4e+02 3.5 0.6 2 23 411 432 410 432 0.95

11 16 3.3 7.5e+02 3.1 0.1 1 13 481 493 481 497 0.87

12 16 1.9e-05 0.0043 19.6 0.1 1 23 529 552 529 552 0.97

13 16 0.13 29 7.5 0.2 1 23 556 578 556 578 0.97

14 16 0.13 28 7.6 1.4 1 23 586 608 586 608 0.96

15 16 0.0022 0.5 13.1 0.2 1 23 616 638 616 638 0.98

16 16 0.96 2.1e+02 4.8 1.7 1 23 645 667 645 667 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0024	0.53	13.0	0.6	2	23	49	70	48	70	0.95
2	16	0.011	2.6	10.8	0.2	3	23	80	101	78	101	0.93
3	16	0.017	3.8	10.3	0.3	1	23	106	129	106	129	0.92
4	16	6.9	1.6e+03	2.1	0.4	1	23	136	162	136	163	0.87
5	16	1.5	3.5e+02	4.1	2.4	1	23	185	207	185	207	0.94
6	16	0.057	13	8.7	5.3	1	23	211	233	211	234	0.95
7	16	0.078	17	8.2	2.0	3	23	310	332	309	333	0.93
8	16	0.0025	0.57	12.9	4.6	2	23	350	371	349	371	0.96
9	16	0.41	93	5.9	0.5	1	23	381	403	381	403	0.94
10	16	2.4	5.4e+02	3.5	0.6	2	23	411	432	410	432	0.95
11	16	3.3	7.5e+02	3.1	0.1	1	13	481	493	481	497	0.87
12	16	1.9e-05	0.0043	19.6	0.1	1	23	529	552	529	552	0.97
13	16	0.13	29	7.5	0.2	1	23	556	578	556	578	0.97
14	16	0.13	28	7.6	1.4	1	23	586	608	586	608	0.96
15	16	0.0022	0.5	13.1	0.2	1	23	616	638	616	638	0.98
16	16	0.96	2.1e+02	4.8	1.7	1	23	645	667	645	667	0.94

Sequence Information

Coding Sequence: CCAGACTTCGAGTCGTTCCGCACCCATCTCAAGTCTCACCTGGAGGAGGCGGGAGGGCTCCGGGGTCTACTCGGGGGTGGTGGCACGGACCTGCTGGCTATGCTCGCCGCCTCCTCGGAACAACGTGTCAAGAGCCCCGCCCTGCCCTGTCCCCACTGTGGCGCCAAGTTCTCCAGCCCAGAGGACCATCAACAGCACCTCGCCAGTCACTTCCTGGCCACGGTGACTGAGTACGGTTGTCAGAGCTGCCTCAAGCTCTTCTCCAAGCCTGACGAGCTGCAGAAACACCTCATGGATATCCACGCGCACCATCTCTACCGCTGTTCCCTGTGCAAGGAGATGTTCGACTCCAAGGTGGCCATACAGGTCCACTTCGCGGTAAAGCACAGCAACGAATGCAAGCTGTACCGCTGCACAGCCTGCCCATTATCATCAGCGGTCTTCCGTTCGGAGATGGACTTCGGTCTTCACGTCCGGACAATCCACCACCACCCCCCGCCGCCCCTTCCTCTGTCGCCGACCAAACTTCCCGCCTCCGCATCTCAGCAGCAGTTCCGCTGCTTGTTCTGCCGCCTCAGCTTCCCGACTGAGCACGACATGCAGTTCCACTTGACGGTCCACTCTAAGCAGTTTCACTGTCCTTTTTGTCAAGAGGGCTTTCATGTGGAGTTCTTGTTGGACAAACACATGCAGACTCATCATACCACGCAGGTCCTGAGCAGCAGCTCATCGAATGGCGTGGACAACCCGAGTCAACAGAAATCCCCCAAGAGCAAACCTTCAAGTGGCGGCAACCCTTCAAACTCCATGGTGACTATTGGAAATAACAATTCTTCTCTCAacattaacaacaacaacaactccTCGAGAGGCTCCAGCTCAGACAATGGGGTCGCTTCCAAGATACCTGAAAGCGCCAAGAACTGCTGTGACATCTGTGACCGGCGTGACTTCGCCAGCGAGTCCGAGCTGACAGCGCACCGGAAGCTGGTCCACCACGTGAAAACCGCCGGCGCTGGTGGGGGTAAGAATGGTGCCGTCAGTCTCCACTGCGCCTACTGCAGCGAGAACTGCAAGTCCAGGACGGAACTAGAGAACCATATGAAGACTCACTCCCAGGGCAGTGGAGGTTCGGGGAAACACAAGTGCAACATCTGCGATGAGCTGTGTCCGTCGGCGGCCATCTTGGCTGAGCACAAGTTGACGCACTGCAAGGTCGTCTCTGGGAGCGTCTGCACACAGTGCAAGTCCAATCTCGTCAGTGAGGAGCAGTTCTACTCGCACCTACAGCAGCATGGAGGGGGTGGGGCAAACAACTCTACCAACAGCCCTCAACAGGTTGCCTTACCGACGCCATGCGTCGTCTGCAGACAGACGTTGATATCCGACATTGAGGTCCGCATGCACGCCCGGTTTCACCTGAAGAACTCCGAGCCGACCTACCAGTGCTTCCTGTGCCTGAAACAGTTCGAGTCCCAAAACCTGGTGGTGGCCAACGGAGGCCACCAGGCCGCCACCTACGTGTGCAAGGAGTGCTACCACTGCCACAGTAAGACGTCGCCGTCCCCAAGCCAGGAGCAGGCGTTCAGATGTCCAGAGTGCCAGGTCAAGTTCGAGACGAGCTCTGCGCTGGAGGCTCATCTAGTGACCGTCCATAAGAAAACCTACCAGTGCATCAAGTGCCAGATAAGTTTCGAGACCGAACGCGAGATCCAGCTTCACGTGGCTACCCACCTGTTGACTGAGGGCAGCAGCCACGAGTGCCACCTTTGTCGCCGCCTGCTGTCCACACCACTTAAGTTGCAGGCCCACCTCATAGAACACACCTTCGCGGGCTGCGGCAGCTACACCTGCTACCTGTGCAGCGCGGTCTTCACGGCGTCCCAAGGCCTGCAGCAGCACATGCTAGAGCATGGCCTGGCGGCCAGGCCTTACGACTGCTCCAGGTGTAGCCTGCGGTTCTTCTTTAGAGCGGAGCTGGACAACCACAGCTACAGCCACCTGGAGGAGGCTATGGTTGGAGGTTCCGGGGCGCTAATAGATGGAGGCGACCTGGCTACCAAGGTAAATAGATAG
Protein Sequence: PDFESFRTHLKSHLEEAGGLRGLLGGGGTDLLAMLAASSEQRVKSPALPCPHCGAKFSSPEDHQQHLASHFLATVTEYGCQSCLKLFSKPDELQKHLMDIHAHHLYRCSLCKEMFDSKVAIQVHFAVKHSNECKLYRCTACPLSSAVFRSEMDFGLHVRTIHHHPPPPLPLSPTKLPASASQQQFRCLFCRLSFPTEHDMQFHLTVHSKQFHCPFCQEGFHVEFLLDKHMQTHHTTQVLSSSSSNGVDNPSQQKSPKSKPSSGGNPSNSMVTIGNNNSSLNINNNNNSSRGSSSDNGVASKIPESAKNCCDICDRRDFASESELTAHRKLVHHVKTAGAGGGKNGAVSLHCAYCSENCKSRTELENHMKTHSQGSGGSGKHKCNICDELCPSAAILAEHKLTHCKVVSGSVCTQCKSNLVSEEQFYSHLQQHGGGGANNSTNSPQQVALPTPCVVCRQTLISDIEVRMHARFHLKNSEPTYQCFLCLKQFESQNLVVANGGHQAATYVCKECYHCHSKTSPSPSQEQAFRCPECQVKFETSSALEAHLVTVHKKTYQCIKCQISFETEREIQLHVATHLLTEGSSHECHLCRRLLSTPLKLQAHLIEHTFAGCGSYTCYLCSAVFTASQGLQQHMLEHGLAARPYDCSRCSLRFFFRAELDNHSYSHLEEAMVGGSGALIDGGDLATKVNR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01451004;
90% Identity: iTF_01451004;
80% Identity: -