Basic Information

Insect: Timema bartmani
Gene Symbol: prdm10
Assembly: GCA_902151455.1
Location: CABFWB010000552.1:126121-175218[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0019 0.43 13.3 0.5 2 23 730 751 729 751 0.96

2 14 0.054 12 8.7 7.2 1 23 759 781 759 781 0.99

3 14 0.00036 0.08 15.6 2.9 1 23 787 810 787 810 0.97

4 14 0.36 81 6.1 0.2 2 23 837 858 836 858 0.93

5 14 0.003 0.68 12.7 0.7 1 23 890 912 890 912 0.97

6 14 0.00032 0.072 15.7 1.9 2 23 935 956 934 956 0.97

7 14 0.0011 0.24 14.1 0.1 1 23 992 1014 992 1014 0.98

8 14 0.0069 1.6 11.5 3.5 1 23 1020 1043 1020 1043 0.95

9 14 7.1e-05 0.016 17.8 0.1 1 21 1048 1068 1048 1069 0.95

10 14 0.0094 2.1 11.1 5.7 1 23 1104 1126 1104 1126 0.98

11 14 4.2e-05 0.0093 18.5 3.7 1 23 1132 1155 1132 1155 0.94

12 14 0.0078 1.7 11.4 1.4 1 23 1190 1213 1190 1213 0.95

13 14 0.00054 0.12 15.0 2.5 1 23 1235 1258 1235 1258 0.96

14 14 0.001 0.23 14.2 1.8 3 23 1298 1319 1297 1319 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0019	0.43	13.3	0.5	2	23	730	751	729	751	0.96
2	14	0.054	12	8.7	7.2	1	23	759	781	759	781	0.99
3	14	0.00036	0.08	15.6	2.9	1	23	787	810	787	810	0.97
4	14	0.36	81	6.1	0.2	2	23	837	858	836	858	0.93
5	14	0.003	0.68	12.7	0.7	1	23	890	912	890	912	0.97
6	14	0.00032	0.072	15.7	1.9	2	23	935	956	934	956	0.97
7	14	0.0011	0.24	14.1	0.1	1	23	992	1014	992	1014	0.98
8	14	0.0069	1.6	11.5	3.5	1	23	1020	1043	1020	1043	0.95
9	14	7.1e-05	0.016	17.8	0.1	1	21	1048	1068	1048	1069	0.95
10	14	0.0094	2.1	11.1	5.7	1	23	1104	1126	1104	1126	0.98
11	14	4.2e-05	0.0093	18.5	3.7	1	23	1132	1155	1132	1155	0.94
12	14	0.0078	1.7	11.4	1.4	1	23	1190	1213	1190	1213	0.95
13	14	0.00054	0.12	15.0	2.5	1	23	1235	1258	1235	1258	0.96
14	14	0.001	0.23	14.2	1.8	3	23	1298	1319	1297	1319	0.98

Sequence Information

Coding Sequence: ATGGACACCAGCAGTAGTCCCCAGAAGGTACCTGGGGATGAAGACGATCTCGCTGGGGTCATTATACCGAACCAGACCGAGGTAGATCTGAACGATTGGATCCCTGTTGTCAATTCACATCTCGATGCCGACGGAAAGGAGGTTGCGGGGACATCGCGTTTGCTGTTTCTTACGGTGGAGTATGTCGAAGAACCCACCGGAGACTACGGCAACTCTGGCTTCTCTTCGTTTGAGCCAGTCACATCCTTCTCTCCCCATATCTCATCTTCCTTGTCAGAGTTTGAACAGCGCGTCAGCCCCCTGGACCCAAACATGAGCTCGGCGGCTTGCTACTCCCCAGTGTACACCATCGACCAGAGCCCCACCACTGCGGATGTGAACCAATCATCCAACCCCAGCTCGCCCTTTCAAAACCAAATGGTGGTTCTTCATAATCCAACCAGTCCCTTAATATCCTCGTCCACACCTTCAAGTGCCCTCTCTCCATCCGGCCAAACGTTTGTCGACACCTCACACTCGACCGTCTCGTTGACTGGCGGCAGAATCATCCACACATACGTCACACACCTTTCCAGTCCTGATTCCACCCTCCCAATCCTGTCGCAGTCCGAGACAGAGGATGGCAAGGCTCTTCTCCAAGAAGTTGAAATGGGAGGGACATTTTATCATGAGAGCCCCACAGGGGGCTCCCCTCACTCTTCTGGCTCGGAGAACTATGTCGTGTCTTCGTCTGGAACTCTGTTGAATGCGATTCCCTCTTCGGCGGCAGACTTCGTGGAAGCTATCTCCATAAATGTGGACACGTCTTCCTCCGGTGTGGTGGACTCTACCAGCGACTTATTGATGCACAGTTCACAACTTGTTCCGGGAGCAGAGTTCTCCGAGCTGACGGCCGGTGGCGCGATGGTCCTGACTAGTCCCAACCAGAAGAGGGATCCAGGTGCCTTGGAGCATTTCCAGGTGGTCATCTCGAGCAGTGACGGAGAGAACATCGCGTACAGTATCGACGGACAGACCACCTACATCAACTCTGCCCAGATCAGAGCGGACTTGCTGAACGCAGCTAGGGCCGGGGCCACCACCTTCGAGGACTTGGAAGCTGTCATCAATCTGTTCAAGTCTCATGGTGTTATAATTGAAGGTGTGGATGAGAATGAGCTGAGAGGGGAACAGCTTCAAGATAGTCTCAACATAAACGAAGTGAATCTGGAGTTAACTTCAGAGCCGCCAGAGTTCATCAACTCGACCTTACTCGGGTCTAGCGTCGACTTGGCTATGCGGCGGGAAGTTCATCTGGACCCTGAGATATTAAAGGAAGGTGTAATGGTCAACCACGCCTTGGAACTCACTAAGGGGTCATTTTGCGAGGACCTACTGATGGAAGGGACATCTTGCGACACGAAACCTATAGACTTGCAAGAAGACAGCAAGGACCTACCGATGGAACAGGCACCTTGCGACGCTATAACGATACACTCGCAAGAAGACAACAAGAACCTCATGGTCGAACAGACCTCTTGCGACGCAGTACCGATACAATCGCAAGATGACAGCAAGAGCATGGAGGCTCTTCGTCGGTCCAAGAGGCTCATCCAAGAGCAGACGACTGTCCAAACTGAGATAAACTGTGAAGACTGCAACAACTCCGTAGACCAGAGCTGCCCCCAACACGCGGTACAGTCCATCTCGGACAAACCAGTTCCTTCTCGGGCATGGGCTACATTACCTGCAACTTACCTGGCTATCAATAAGACGGAGACTCTGAATAACGGGGAAGCCGTGTGGGGGGTGTTTGCACGCAAGACTATCCCCAAGAGGACACAGTTTGGACCAATCAAGGGAGTCTTGTTGAAGGACTCGTGCAGTGCCGTCTGCTCGGAAAAAGTCGGCTCCCAGCAGGTTCGACTTCTTGTCGAAAGCGATGCAGGGGAGATACACTCCCTGGATGTATTTGACGAGAACTTGTCCAACTGGATGAGGTTTGTGCGAGGGGCGGAAACTCTCAAGGAACAGAATATGATCCTCAACCAGCGAGGCTCCTCGCTGTATTTCACGACGACGAGAGTGATTCATCCCAGAGACGAACTGAGGGTGTGGTATAGCTCCTCCTATGCCTCTAAGAGGGGACTCGCCCTTCTCGACAACAGAAAGAAAACTTTAGATGCCGCGGATATGGAGAGCACATGGCCGTGCTTTGAAtgtaatgatacatttttcacatCTAAAGACTTGCAACGACATCTGAATATTCATGATACAGAAAAGaAATGCCGGTATAAATGCACcgtctgtcatcggcagtttccATGCACTTACAGTCTGAAAAAACACCAAATGATGCACAGTAGCAACAATCTCCACACTTGCCCTTTTTGTGGGGAAGAGTTCTCTTACTTGTATAACAGGAACAGGCACATCAAGAAAACTCACAACAAGCTTTACAAAGACGTATCTCCCAAGTCTGGTACCTCCTTGTTCAAGAGAAGGGTGAACAGTTGTAGTGAGTGGATATGCACACACTGCGCCTTGACGTTTGACAATCCGTCAATACTGAACCTACACACGTTGGCGCACGCGGCCAAAAATCTCGAGGAGGAGGAGGCGGAGGTTATAACGGGGCTTCCGTTGGACTTCTTGACGGTGTACAACAATGGGGACATCCAGGACTTCCACTGCCCGCAGTGTAAGGAGCAATTCCCCAGTAAGGTAAAGTTGATCGACCATGTATCCATTCACGGAAAGGCCAAGATAAAAAGAGCGCATCGGCGAATAAGAGGCAGCATCAATCCTGCCAAACCCTGGAAGTGTGAACTTTGTTACAAGTCCTTTGCTACGCAGGACAGGCTACAGCATCACAGGTTGGTCCATGGCTCAGAGGAGTTGAAGCCACTACAGTGCGTCGTCTGTTGTAAGAGGTTCCTAAACAACTCGGCTCTTGCCTGCCATGCCAAGACCCACTCTGaGAAAAAAACTTTCGAATGTcccatttgtaaattaatatttgagcATATATTGGAATTGAGAGCTCACGTTCGCATTCATGCAGTTAATGGCTTATTTACGTGCCCACAATGCCATAAGGTGTTTGACGGGTACAATCACATCCGCAAGCACGCGCGGGCCTTTCACAATAGCAAGTGTTTTACCTGCGACCTCTGCGAGAAGGCGTTTCCTCGCCCTGACAAACTCAAACTCCATATGCTCAGGTACTGCTACCAATCTCGAGCAGAAGCTAGTCTCGACAGCGTTGTGTTTGATGAATACATTCTGATTCGCAAGCACATACAAGCGTTCCACTGTGATCGCAAACATACATGCTCGTACTGTGAAAAACTATTCCATACATTGGATAAACTCAGAATGCATATGCTCAGGCACTCCGACCACCGTGAGTTCCTATGCGCGCACTGCGGCAAACAGTTCAAACGCAAGGACAAGTTAAAGGAGCACATGACGCGCATGCATTCAGTAGATAGAGAGCTGCGCATGGCTGTTAATACTCCGCGCACCCGAGTCGCCAAGAAATTCATGCCCAAGGTGTCCCCTAATGATTATCACCGGTTCATATACAAGTGCCACACCTGTCTGGTGGGGTTCAAGCGCAGAGGCATGCTGGTGAATCATCTGGCTAACAGGCACCCCGACGTCAGTCCTGACTCGGTGCCCGAACTAAACCTGCCCATCCTCAAGACTACCAGGGACTATTTCTGCCAGTACTGCGACAAGGTGTACAAGAGCAGTTCAAAACGTAaagtacatattttgaaaaaccatcctGGTGCCGAACTACCCATGAGCAATAGAAGAAAGGGCGGGGTGCCAGATATCCCGGGGCTACCCAACCCGACATTTTCTCAGACTGTGGGCAGTGTGACAACTCACCCTCATGGCTGTCCTTGGTGTCACAAGCAGTATGCCTCCAAGGCCAAACTGCTGCAACACCAGAGGAAAAAACACACAGATTTGCTAACGCAAACACAGCAGCCGTCGTCTGAGGACGGAGATAAGAATGTGTCCTCCCCTTCACCCGGCAACCTGGAGATTGCAGAGTCCGGGACACAGATTCAGCTGCAGCTGCAAGGACTGGATTCGATCAACCTTCTGCCAGGTGACTACCAGATCACGGCCACCCAGGAGGAGCTCAGAGAGTTCCAGGAGTCAGGGTTATTTATCGATGCCTCGCTGCTCAAACGGCCAATAAAGGGTCTTCCAGACGGCTTGTCAGCCGACCTACTGTCGCAAGCCATGTCCGAGCTCAGTCAATCCATAGGCGAGTTCCGCCTGTCCATGGGGACACCCCCCCACGACCACTACTTTAAAATAGTCCACTCTTCACCGGGCCATATCATGCTAACATCGGCCAGCTCCCTCCCCTCTCCGTCAGAAACCCCCGCCCCCCCTGATTCTGACCCTATTTTGGAAAGGATCCTACTCTCCCCCCACTTCATGGGCCAACACCCAAGTCGCTTACACTCCCTACACTGCACGCTGACGTTAGTCGGGACACGTCTGCTGCCATTGTATTTTGACACCCCTTGTGTCACTTCGGAAGAGGTGCTCACGCTTGTATAA
Protein Sequence: MDTSSSPQKVPGDEDDLAGVIIPNQTEVDLNDWIPVVNSHLDADGKEVAGTSRLLFLTVEYVEEPTGDYGNSGFSSFEPVTSFSPHISSSLSEFEQRVSPLDPNMSSAACYSPVYTIDQSPTTADVNQSSNPSSPFQNQMVVLHNPTSPLISSSTPSSALSPSGQTFVDTSHSTVSLTGGRIIHTYVTHLSSPDSTLPILSQSETEDGKALLQEVEMGGTFYHESPTGGSPHSSGSENYVVSSSGTLLNAIPSSAADFVEAISINVDTSSSGVVDSTSDLLMHSSQLVPGAEFSELTAGGAMVLTSPNQKRDPGALEHFQVVISSSDGENIAYSIDGQTTYINSAQIRADLLNAARAGATTFEDLEAVINLFKSHGVIIEGVDENELRGEQLQDSLNINEVNLELTSEPPEFINSTLLGSSVDLAMRREVHLDPEILKEGVMVNHALELTKGSFCEDLLMEGTSCDTKPIDLQEDSKDLPMEQAPCDAITIHSQEDNKNLMVEQTSCDAVPIQSQDDSKSMEALRRSKRLIQEQTTVQTEINCEDCNNSVDQSCPQHAVQSISDKPVPSRAWATLPATYLAINKTETLNNGEAVWGVFARKTIPKRTQFGPIKGVLLKDSCSAVCSEKVGSQQVRLLVESDAGEIHSLDVFDENLSNWMRFVRGAETLKEQNMILNQRGSSLYFTTTRVIHPRDELRVWYSSSYASKRGLALLDNRKKTLDAADMESTWPCFECNDTFFTSKDLQRHLNIHDTEKKCRYKCTVCHRQFPCTYSLKKHQMMHSSNNLHTCPFCGEEFSYLYNRNRHIKKTHNKLYKDVSPKSGTSLFKRRVNSCSEWICTHCALTFDNPSILNLHTLAHAAKNLEEEEAEVITGLPLDFLTVYNNGDIQDFHCPQCKEQFPSKVKLIDHVSIHGKAKIKRAHRRIRGSINPAKPWKCELCYKSFATQDRLQHHRLVHGSEELKPLQCVVCCKRFLNNSALACHAKTHSEKKTFECPICKLIFEHILELRAHVRIHAVNGLFTCPQCHKVFDGYNHIRKHARAFHNSKCFTCDLCEKAFPRPDKLKLHMLRYCYQSRAEASLDSVVFDEYILIRKHIQAFHCDRKHTCSYCEKLFHTLDKLRMHMLRHSDHREFLCAHCGKQFKRKDKLKEHMTRMHSVDRELRMAVNTPRTRVAKKFMPKVSPNDYHRFIYKCHTCLVGFKRRGMLVNHLANRHPDVSPDSVPELNLPILKTTRDYFCQYCDKVYKSSSKRKVHILKNHPGAELPMSNRRKGGVPDIPGLPNPTFSQTVGSVTTHPHGCPWCHKQYASKAKLLQHQRKKHTDLLTQTQQPSSEDGDKNVSSPSPGNLEIAESGTQIQLQLQGLDSINLLPGDYQITATQEELREFQESGLFIDASLLKRPIKGLPDGLSADLLSQAMSELSQSIGEFRLSMGTPPHDHYFKIVHSSPGHIMLTSASSLPSPSETPAPPDSDPILERILLSPHFMGQHPSRLHSLHCTLTLVGTRLLPLYFDTPCVTSEEVLTLV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447928;
90% Identity: -
80% Identity: -