Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010000211.1:287732-298401[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 9.5e-06 0.0021 20.5 2.4 1 23 57 79 57 79 0.97

2 30 0.00016 0.035 16.7 2.5 1 23 85 107 85 107 0.97

3 30 0.00014 0.032 16.9 1.7 1 23 113 135 113 135 0.97

4 30 3e-06 0.00068 22.1 1.0 1 23 141 163 141 163 0.98

5 30 4.4e-06 0.001 21.6 0.7 1 23 169 191 169 191 0.98

6 30 0.001 0.23 14.2 4.4 1 23 201 223 201 223 0.98

7 30 0.0004 0.09 15.4 0.2 2 23 230 251 229 251 0.96

8 30 9.7e-07 0.00022 23.7 0.5 1 23 257 279 257 279 0.98

9 30 4.1e-06 0.00092 21.7 1.3 1 23 285 307 285 307 0.97

10 30 2.3 5.1e+02 3.6 0.2 1 11 313 323 313 324 0.94

11 30 1 2.3e+02 4.7 0.7 2 23 362 383 361 383 0.95

12 30 4.5e-05 0.01 18.4 0.0 2 23 391 412 390 412 0.97

13 30 0.0036 0.82 12.4 2.2 1 23 456 478 456 478 0.98

14 30 0.43 97 5.9 2.1 1 23 484 506 484 506 0.92

15 30 4.2e-06 0.00094 21.7 4.2 1 23 512 534 512 534 0.98

16 30 0.00063 0.14 14.8 2.3 1 23 544 566 544 566 0.97

17 30 2.5e-05 0.0057 19.2 0.3 1 23 572 594 572 594 0.98

18 30 1.6e-07 3.5e-05 26.1 1.7 1 23 600 622 600 622 0.99

19 30 7.4e-06 0.0017 20.9 0.9 1 23 628 650 628 650 0.99

20 30 0.13 30 7.5 0.9 1 14 656 669 656 670 0.91

21 30 0.00071 0.16 14.6 0.5 1 19 680 698 680 700 0.96

22 30 0.012 2.8 10.7 5.5 1 23 708 730 708 730 0.98

23 30 0.81 1.8e+02 5.0 0.5 3 23 736 756 736 756 0.97

24 30 0.074 17 8.3 0.7 2 23 763 784 762 784 0.89

25 30 8.3e-07 0.00019 23.9 2.2 1 23 790 812 790 812 0.98

26 30 0.13 29 7.5 1.2 1 23 822 844 822 844 0.90

27 30 0.00025 0.057 16.1 0.1 1 23 850 872 850 872 0.97

28 30 6.4e-06 0.0014 21.1 0.6 1 23 878 900 878 900 0.98

29 30 2.1e-05 0.0046 19.5 1.1 1 23 906 928 906 928 0.98

30 30 4e-05 0.009 18.6 2.4 1 23 934 956 934 956 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	9.5e-06	0.0021	20.5	2.4	1	23	57	79	57	79	0.97
2	30	0.00016	0.035	16.7	2.5	1	23	85	107	85	107	0.97
3	30	0.00014	0.032	16.9	1.7	1	23	113	135	113	135	0.97
4	30	3e-06	0.00068	22.1	1.0	1	23	141	163	141	163	0.98
5	30	4.4e-06	0.001	21.6	0.7	1	23	169	191	169	191	0.98
6	30	0.001	0.23	14.2	4.4	1	23	201	223	201	223	0.98
7	30	0.0004	0.09	15.4	0.2	2	23	230	251	229	251	0.96
8	30	9.7e-07	0.00022	23.7	0.5	1	23	257	279	257	279	0.98
9	30	4.1e-06	0.00092	21.7	1.3	1	23	285	307	285	307	0.97
10	30	2.3	5.1e+02	3.6	0.2	1	11	313	323	313	324	0.94
11	30	1	2.3e+02	4.7	0.7	2	23	362	383	361	383	0.95
12	30	4.5e-05	0.01	18.4	0.0	2	23	391	412	390	412	0.97
13	30	0.0036	0.82	12.4	2.2	1	23	456	478	456	478	0.98
14	30	0.43	97	5.9	2.1	1	23	484	506	484	506	0.92
15	30	4.2e-06	0.00094	21.7	4.2	1	23	512	534	512	534	0.98
16	30	0.00063	0.14	14.8	2.3	1	23	544	566	544	566	0.97
17	30	2.5e-05	0.0057	19.2	0.3	1	23	572	594	572	594	0.98
18	30	1.6e-07	3.5e-05	26.1	1.7	1	23	600	622	600	622	0.99
19	30	7.4e-06	0.0017	20.9	0.9	1	23	628	650	628	650	0.99
20	30	0.13	30	7.5	0.9	1	14	656	669	656	670	0.91
21	30	0.00071	0.16	14.6	0.5	1	19	680	698	680	700	0.96
22	30	0.012	2.8	10.7	5.5	1	23	708	730	708	730	0.98
23	30	0.81	1.8e+02	5.0	0.5	3	23	736	756	736	756	0.97
24	30	0.074	17	8.3	0.7	2	23	763	784	762	784	0.89
25	30	8.3e-07	0.00019	23.9	2.2	1	23	790	812	790	812	0.98
26	30	0.13	29	7.5	1.2	1	23	822	844	822	844	0.90
27	30	0.00025	0.057	16.1	0.1	1	23	850	872	850	872	0.97
28	30	6.4e-06	0.0014	21.1	0.6	1	23	878	900	878	900	0.98
29	30	2.1e-05	0.0046	19.5	1.1	1	23	906	928	906	928	0.98
30	30	4e-05	0.009	18.6	2.4	1	23	934	956	934	956	0.99

Sequence Information

Coding Sequence: ATGCAAGACAAGATAAAAAGTGTAGTCAGAAACTCAAGTCGATACACCACAAAGGACGATACCGCGGACACACAGAACTACTGCTCACCATCGGATGGTGTTAAGGTTATATCTGATCGAATTGGATTATCGGTAAGCCTGAGGAGTGGTACAGGCGATGTACCCAATTACAACTGCGGAATATGTGGGAAAGTATGCGTGTCCAAGGGCCACCTTAAAAGGCATCAGGTGTCGCACACAGACGATAGACCGTACCACTGCGACATTTGCGACCGAAACTACAAACGGGCCTTCGAGTTACGCAAACATAAAGAGATCCACACGGGAGAAATGGAGCACGTCTGCGACATTTGCGGCTATGCCACCTTCCGCAAGTCGAACCTTCTTGTGCACAAGAAGAGACACTTAAATGATTACAAGTTCAAATGCGACACTTGCGGCAAAGGGTATTATTCCAACACAGAGCTCCAGCGTCACATGACCATACATACCGGTGAACGCCCCTTCCAATGTGACGTGTGTGGCCGGGCGTACCCGTACAAGAGTAACTTAGCGACCCACAAGAAAAAGCACAAcccaaattataaaaacaacttaaagTATCAGTGCGAGTTTTGTGGCAAAACGTTTCTCCACAACAATTCGTTGCGTATCCACAGGAAGTATCATCTCGGGGAAAACCAGTTGATGTGCGATGTTTGCGGGAAAACCCTCTCTGGTGTAGACTCGCTTAGGACTCATAGGCGGATACACACTGGAGAGAAGCCATTCTCTTGTGACCTTTGTGGTAAGGAGTTCAGTAAACCTGACTATCTGAAGGTTCATCGGCGGATACACACTGGAGAGAAGCCTCACCCTTGCGGCGAATGTGGCAAATCATTCACTCAGCTCTCCACACTCTCTGTTCACAAGAGGAATCACTCTGGACTCAAACCGTACCAGTGCCAGATGTGCGCCAAGGCGTTCAAAATCATTTCGGTAAAAACTGAAGGAAAGGCAAGCTCAAAGGGGAAACCTATAAGGATACCTCAAGATCGCAACTCACTATCGAAGCGCAAGCGATCCAACAGAAAAGAGCCATTGAAGTGCGTGTCTTGTCCCTCAAGTTTCACTACGTTTATCCGGTACAAGGAACATGTAATGTCTCACTCGAGCGGTGCTGTCGCGATGGTGTGTGATGTTTGCGGGGAGAATTTCAGCAACCCGGCCGGGTTGATCTGGCATCGCAGGTTGCATAGCGCTAGTAGAGGTAGAACTACCAAAAAACCTACCCCGTGTGAAGCCCCAGAGCCAAGTAATTCCTCACAAAGAGCTCCACATCCGACGGTGATAGGCCCGCGAAGAAGGGCCATAGGATTGAAACGACACACGTGCGATATTTGCGGTTATTCCAGCAAGAGCAAGTCCTTTGTAGCCATGCACAGGAAGATGCACTACAACGAATACAAGTTCTACTGCAGGATATGCTCTAAAGGATACAACTCGGTTAAGTTACTTCACGACCACGAGTTTCTACACACTGGCGTCAAAGCTTTCCAATGTGATCAGTGCGGGAAAAGGTTTTCTTCCAGGCACAATTTAGAATCTCATAAAAAGCTTCACATACAAGATTTTGTGAATAACCCTAATTTCTATTGTGAATTTTGTGGCAAGAGTTTCCTGTACAGCAAGTCTCTGAGGAGGCACCGAGACATTCATTTGGGGGAGAATAAGTTTGAATGTGATATATGTGGTAAGATGCTGAACTCTAAGGAGTATATGAAGGTTCACTTGCGAATACACAAAGGAGATAAACCTTATGTTTGTGACATGTGCGGTAAGGCCTTTGTCACGAACAAGCACTTGACGATTCATCGACGCACACACACGGGGGAAAAGCTCTATACCTGCGGGGTGTGCAACAAGTCATTCACGCAGGTTGGGTACTTGACGATCCACAAACGCTCGCATACGGGCGAGAGGCCGTACCACTGTGATGTGTGCGGCAAAGACTTTGCCTCAAAATACACCCCCAGCGATTGGGGTGGGATCAAGATCTATAAATGCAACGTTTGCGGTAAAATCTGTAAGACCCTGGCCCTTCTCAGGGAGCACGCATACTGTCACGTCACTGAGAGGTCCTTTTCTTGTGACTTGTGCAACAAGAAGTTCAAATCAAAGAAACGTGTTCACAACCACAGGCAagttcactttaaaaaacactGGTGTGATATCTGTGGGTATACCTCCGAGAAGAAAGTGTACATCGACACTCACAAAAAAATgcattacaatatttacaacCTCTACTGCGGCACATGTTCGAAAGGTTTCAATACCGAGAAGTTGCTTCATATACACGAAGGACTACATACCGGGGTGAAGCCTTTCAAATGTGATGAATGTGAGaaagcgttcacttctaaatataatttattgaaacacaAGAGACTTCACGACCCCACGTACATAAACAGTCCAAAATACTACTGTGAGTTTTGTGATAAATCTTTCCTGTACGTTACTGTGCTGAACAAGCACAGGAGCGCCCATCTTGGCGAGAACAGGTTCGAATGTGATTTGTGCGGGAAGGTCGTCAACTCAAAGGCATCCATGAGAACTCACTTGCAGGCTCACAGCGGAGAGAAGCCCTTTGTCTGTGATGTGTGCGGCAAGACGTTTTTGACGAACAAGAACTTGGTGGTGCATAGACGGACGCATACAGGGGAAAAGTTGTACTCTTGCAGCATGTGTGAAAAGTCGTTCACACAGGTGGGCTATTTGAACATCCACAAACGCTCACATACGGGCGAGCGGCCGTACCGCTGCGATGCGTGCGGAAAGGACTTTGCTTCTAAGTGTCAGCTGAACTCTCACCAGAAAATGCACGCCGGTGTCATGTGA
Protein Sequence: MQDKIKSVVRNSSRYTTKDDTADTQNYCSPSDGVKVISDRIGLSVSLRSGTGDVPNYNCGICGKVCVSKGHLKRHQVSHTDDRPYHCDICDRNYKRAFELRKHKEIHTGEMEHVCDICGYATFRKSNLLVHKKRHLNDYKFKCDTCGKGYYSNTELQRHMTIHTGERPFQCDVCGRAYPYKSNLATHKKKHNPNYKNNLKYQCEFCGKTFLHNNSLRIHRKYHLGENQLMCDVCGKTLSGVDSLRTHRRIHTGEKPFSCDLCGKEFSKPDYLKVHRRIHTGEKPHPCGECGKSFTQLSTLSVHKRNHSGLKPYQCQMCAKAFKIISVKTEGKASSKGKPIRIPQDRNSLSKRKRSNRKEPLKCVSCPSSFTTFIRYKEHVMSHSSGAVAMVCDVCGENFSNPAGLIWHRRLHSASRGRTTKKPTPCEAPEPSNSSQRAPHPTVIGPRRRAIGLKRHTCDICGYSSKSKSFVAMHRKMHYNEYKFYCRICSKGYNSVKLLHDHEFLHTGVKAFQCDQCGKRFSSRHNLESHKKLHIQDFVNNPNFYCEFCGKSFLYSKSLRRHRDIHLGENKFECDICGKMLNSKEYMKVHLRIHKGDKPYVCDMCGKAFVTNKHLTIHRRTHTGEKLYTCGVCNKSFTQVGYLTIHKRSHTGERPYHCDVCGKDFASKYTPSDWGGIKIYKCNVCGKICKTLALLREHAYCHVTERSFSCDLCNKKFKSKKRVHNHRQVHFKKHWCDICGYTSEKKVYIDTHKKMHYNIYNLYCGTCSKGFNTEKLLHIHEGLHTGVKPFKCDECEKAFTSKYNLLKHKRLHDPTYINSPKYYCEFCDKSFLYVTVLNKHRSAHLGENRFECDLCGKVVNSKASMRTHLQAHSGEKPFVCDVCGKTFLTNKNLVVHRRTHTGEKLYSCSMCEKSFTQVGYLNIHKRSHTGERPYRCDACGKDFASKCQLNSHQKMHAGVM*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447744;
90% Identity: iTF_01447744;
80% Identity: -