Tbar023838.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- MBD2
- Assembly
- GCA_902151455.1
- Location
- CABFWB010001859.1:95431-114599[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-08 0.0009 21.0 0.0 36 73 129 161 109 164 0.88 2 2 0.0017 25 6.8 0.1 28 74 178 237 167 240 0.81
Sequence Information
- Coding Sequence
- ATGGATTGGTTGTGGTGGTCCTGTTCCATGGCCAGCTCGGTCTCCCGACCTGACATCCCCAGATTTCTTTCTATGGGGACTTTTAAAAGGTGTGTTTATGCCAACAAGCCAAGATCGATTGAGGAATTGAAAGACATCAGGCATGAAATTGCTGCCATCAATGTCGCTACGCTACATCGCACATTCACCAAAATGAAGCATCAGGGGAATATGTGTTTGGACGCCGGTGGTGGGCACGTCAGCATCTTCTATGATATATTCTTATTTGTCATGGGCCAGGTCGCGGCTGGTGCGACAGACACATGTGTCGCAGAGAGTTTTTGTGAAGGTGTCGAACATATCTGTCAAAAACTTCCTGCAGACTTTCAACAAAAGTTGATCAACTTTCATCCTAACGGGCAGAAGTTTCGCAGCAAGGCTCAGCTCGCCCAATATCTGGGCAATACTCTTGATCTCGCCACTTTTGATTTCCGTACAGGCAAAGTAAACTCATTGCTTCTGCGTAAACACAAGAAACAGAGAGGGACCCAATTTGACTACAGCCGAGGTGTGAGGAATGATGCATCACTGGTCCCTCCTATTCGTCAGACAGCATCCATCTTCAAGCAGCCAGTGACTGTGTACAAGACTCAGGAGGGAAAGGTGAAGACCGACTTCAAGCATGGACCCCAGGAGAAACCCAAGCAGTTATTTTGGGAGAAACGGCTGGAAGGGCTACGCGCATGTGACGTTGATGGAAAGGAGTTTGATGCAATGGAGCTGCCTCGCGCCCTTCGAGCTGTAGGGCCCCATGTGGGAGAAGACACTCTACTTCAGTCCATAGCCACAGCACTGCACATGTCTGCCCAACCTGTCACAGGACAGACAGGTTCCCGGTCTGCCCTTGACAAGAACCCTGGGGTGTTCCTCAACCCTGAGCAACCACTGGTGCAGGCTGTATCGGTGGCCGATGATGACATTAAGCGACAAGAAGATAGAGTGGCAATAGCTCGCAAAAAACTGCAGGAAGCTCTGAAGAGACCAATACAGACATAA
- Protein Sequence
- MDWLWWSCSMASSVSRPDIPRFLSMGTFKRCVYANKPRSIEELKDIRHEIAAINVATLHRTFTKMKHQGNMCLDAGGGHVSIFYDIFLFVMGQVAAGATDTCVAESFCEGVEHICQKLPADFQQKLINFHPNGQKFRSKAQLAQYLGNTLDLATFDFRTGKVNSLLLRKHKKQRGTQFDYSRGVRNDASLVPPIRQTASIFKQPVTVYKTQEGKVKTDFKHGPQEKPKQLFWEKRLEGLRACDVDGKEFDAMELPRALRAVGPHVGEDTLLQSIATALHMSAQPVTGQTGSRSALDKNPGVFLNPEQPLVQAVSVADDDIKRQEDRVAIARKKLQEALKRPIQT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -