Tbar052610.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- Paxbp1
- Assembly
- GCA_902151455.1
- Location
- CABFWB010012544.1:2388-6706[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-13 4.1e-09 38.7 0.0 141 272 3 118 1 121 0.90 2 2 0.26 7.5e+03 -1.5 0.0 153 196 149 195 139 197 0.66
Sequence Information
- Coding Sequence
- GAATTGGTAGAGGCTCAGTGGGACCCCCTGTCCACCTCTCAATCTCTGAGGTTGGTAGGCCTGACAAACCGGCTGATTCAGGAGTACCCAACGATGTTACCAACCAGCAAATACCTTGAGAAATTCCTCAGCTCCGTCATTGCCAAGATGAAGAGTTGTGTTGAAAATGATGTTTTTATCCCCATCTACCCTAAGCTGGTGATGGAGTCCAAGGGAGGTGGTATCAATGTGTTCTTCCAGCATCAGTTTGGCAGTGCAGTGAAGCTGCTCCGTAACCTCCTGAGTTGGCAGGGACTGGTCAGTGACCGAGTACTGCAGGATGTTGCTTTGGGGTCGGTCCTGAACCGCTACCTCCTGGCAGCACTCAGAACCTGCGAGCCCACTGATGCCGCCAACAAGTGTACTATGattgtGTCAACATTTCCACGAGGATGGCTTCAACAAGAATGTTCGGTTCCACACCTCTCGATGTTTGTGAACCAGATCAAGATTATTGCTCAATGTCTAGATGTGTCCACAGTATTGGGGAGGGATGCGATAGAACACATAACCAAAATTCTTCAAACTTTGCAACCTTCTAGTTCGGCTTCTTAA
- Protein Sequence
- ELVEAQWDPLSTSQSLRLVGLTNRLIQEYPTMLPTSKYLEKFLSSVIAKMKSCVENDVFIPIYPKLVMESKGGGINVFFQHQFGSAVKLLRNLLSWQGLVSDRVLQDVALGSVLNRYLLAALRTCEPTDAANKCTMIVSTFPRGWLQQECSVPHLSMFVNQIKIIAQCLDVSTVLGRDAIEHITKILQTLQPSSSAS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -